Wall clock time and date at job start Mon Mar 30 2020 02:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.29356 * 2 1 4 4 C 1.52913 * 109.30195 * 240.40798 * 2 1 3 5 5 H 1.08999 * 109.60390 * 308.85657 * 4 2 1 6 6 C 1.50703 * 109.60038 * 69.18010 * 4 2 1 7 7 H 1.08002 * 120.00299 * 27.97147 * 6 4 2 8 8 C 1.37881 * 119.99987 * 207.97207 * 6 4 2 9 9 N 1.31519 * 119.99876 * 353.31281 * 8 6 4 10 10 Si 1.86790 * 120.00202 * 173.31811 * 8 6 4 11 11 H 1.48507 * 109.47431 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47295 * 239.99809 * 10 8 6 13 13 H 1.48504 * 109.47584 * 119.99870 * 10 8 6 14 14 C 1.53342 * 108.67611 * 188.93110 * 4 2 1 15 15 C 1.53066 * 108.43480 * 67.51716 * 14 4 2 16 16 C 1.50171 * 109.89497 * 311.11758 * 15 14 4 17 17 O 1.21277 * 118.24322 * 197.56356 * 16 15 14 18 18 N 1.33349 * 123.51012 * 17.57559 * 16 15 14 19 19 C 1.46497 * 117.94985 * 177.77800 * 18 16 15 20 20 H 1.09000 * 109.46815 * 179.59178 * 1 2 3 21 21 H 1.08999 * 109.46958 * 299.58547 * 1 2 3 22 22 H 1.08995 * 109.47078 * 59.59270 * 1 2 3 23 23 H 0.97003 * 119.99865 * 354.56346 * 9 8 6 24 24 H 1.08996 * 109.67679 * 187.26675 * 14 4 2 25 25 H 1.09001 * 109.67801 * 307.80626 * 14 4 2 26 26 H 1.09002 * 109.39897 * 190.98000 * 15 14 4 27 27 H 1.09005 * 109.32606 * 71.20090 * 15 14 4 28 28 H 1.08990 * 109.47581 * 269.98290 * 19 18 16 29 29 H 1.09003 * 109.46481 * 29.98491 * 19 18 16 30 30 H 1.08997 * 109.47411 * 149.98199 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0355 -0.7127 -1.2549 5 1 1.5484 -1.6836 -1.3454 6 6 1.7264 0.1233 -2.4702 7 1 1.6524 1.1972 -2.3824 8 6 1.5379 -0.4829 -3.6942 9 7 1.7565 -1.7727 -3.8298 10 14 0.9724 0.5277 -5.1597 11 1 0.7981 1.9436 -4.7472 12 1 -0.3210 -0.0048 -5.6588 13 1 1.9899 0.4476 -6.2385 14 6 3.5522 -0.9034 -1.1341 15 6 3.8263 -1.9003 -0.0054 16 6 3.0503 -1.5110 1.2200 17 8 3.3859 -1.9826 2.2857 18 7 2.0118 -0.6747 1.1989 19 6 1.3115 -0.4177 2.4597 20 1 -0.3633 -1.0277 -0.0073 21 1 -0.3633 0.5074 0.8937 22 1 -0.3633 0.5201 -0.8863 23 1 2.1251 -2.2824 -3.0913 24 1 3.9491 -1.2923 -2.0718 25 1 4.0249 0.0512 -0.9027 26 1 4.8915 -1.9017 0.2257 27 1 3.5236 -2.8979 -0.3238 28 1 0.5065 -1.1422 2.5824 29 1 2.0122 -0.5091 3.2896 30 1 0.8948 0.5893 2.4451 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259480840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:54 Heat of formation + Delta-G solvation = -54.324787 kcal Electronic energy + Delta-G solvation = -13152.701733 eV Core-core repulsion = 10947.163543 eV Total energy + Delta-G solvation = -2205.538190 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94397 -36.51069 -34.15167 -32.10068 -30.51512 -26.77615 -26.50333 -23.92042 -21.73469 -21.08233 -18.00614 -17.15706 -15.92161 -15.53282 -14.92468 -13.98676 -13.82433 -13.73656 -12.71487 -12.52377 -12.26147 -12.03374 -11.80328 -11.62042 -11.10002 -10.99241 -10.79651 -10.60845 -10.20089 -10.06454 -9.72671 -9.00972 -8.68418 -8.43613 -8.13992 -6.47436 -4.20335 3.17746 3.38302 3.40085 3.53752 3.62348 4.43787 5.18580 5.22518 5.54314 5.59039 5.73354 5.74709 5.80559 5.93454 6.04615 6.08114 6.20744 6.39324 6.52426 6.60118 6.75551 6.82788 7.08893 7.18251 7.39049 7.88815 8.15039 8.31630 8.69851 8.73800 9.51605 10.91047 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051578 B = 0.011656 C = 0.010113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.739020 B = 2401.658795 C = 2768.048329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.146 3.854 3 H 0.062 0.938 4 C 0.026 3.974 5 H 0.042 0.958 6 C -0.591 4.591 7 H 0.053 0.947 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 1.069 2.931 11 H -0.288 1.288 12 H -0.286 1.286 13 H -0.288 1.288 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.519 3.481 17 O -0.582 6.582 18 N -0.600 5.600 19 C 0.078 3.922 20 H 0.050 0.950 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.272 0.728 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 3.498 5.401 6.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 H 0.080 0.920 4 C 0.006 3.994 5 H 0.060 0.940 6 C -0.629 4.629 7 H 0.072 0.928 8 C -0.181 4.181 9 N -0.542 5.542 10 Si 0.898 3.102 11 H -0.214 1.214 12 H -0.212 1.212 13 H -0.214 1.214 14 C -0.154 4.154 15 C -0.176 4.176 16 C 0.309 3.691 17 O -0.464 6.464 18 N -0.332 5.332 19 C -0.065 4.065 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.371 3.157 4.328 5.530 hybrid contribution 0.429 0.135 1.549 1.613 sum -0.941 3.292 5.877 6.802 Atomic orbital electron populations 1.22027 0.94990 1.01825 1.01573 1.21306 0.94389 0.95888 0.84072 0.92003 1.19223 0.91124 0.97240 0.91775 0.94034 1.21783 1.53447 0.94353 0.93337 0.92832 1.25791 0.94641 0.97055 1.00562 1.70734 1.40670 1.07213 1.35618 0.83543 0.76863 0.74606 0.75224 1.21414 1.21232 1.21439 1.21968 1.00622 0.96693 0.96161 1.21726 0.99751 1.02024 0.94141 1.20309 0.80023 0.77848 0.90934 1.90608 1.68882 1.54994 1.31918 1.47607 1.30585 1.45006 1.09962 1.21577 0.97109 1.00403 0.87394 0.93118 0.93966 0.90089 0.91672 0.91280 0.93032 0.89725 0.89124 0.93273 0.90992 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.64 37.16 0.32 -2.29 16 2 C 0.15 2.87 2.72 -68.37 -0.19 2.68 16 3 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 4 C 0.03 0.58 1.22 -91.64 -0.11 0.47 16 5 H 0.04 1.04 6.96 -51.93 -0.36 0.68 16 6 C -0.59 -14.88 7.48 -34.44 -0.26 -15.13 16 7 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 8 C 0.02 0.65 5.45 -17.82 -0.10 0.55 16 9 N -0.91 -25.53 13.56 55.43 0.75 -24.78 16 10 Si 1.07 23.59 29.91 -169.99 -5.08 18.50 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 C -0.12 -2.45 5.18 -26.52 -0.14 -2.58 16 15 C -0.14 -2.63 6.03 -28.10 -0.17 -2.80 16 16 C 0.52 10.72 7.47 -11.88 -0.09 10.63 16 17 O -0.58 -13.19 16.18 5.56 0.09 -13.10 16 18 N -0.60 -11.47 3.10 -175.18 -0.54 -12.01 16 19 C 0.08 1.25 9.02 59.85 0.54 1.79 16 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.04 0.63 6.62 -51.93 -0.34 0.28 16 22 H 0.08 1.51 7.52 -51.93 -0.39 1.12 16 23 H 0.27 7.59 6.53 -40.82 -0.27 7.32 16 24 H 0.07 1.55 7.87 -51.93 -0.41 1.14 16 25 H 0.05 1.06 8.13 -51.93 -0.42 0.63 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.17 7.13 -51.93 -0.37 0.80 16 30 H 0.06 0.88 7.10 -51.93 -0.37 0.51 16 LS Contribution 243.65 15.07 3.67 3.67 Total: -1.00 -28.86 243.65 -5.55 -34.41 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.25 Total: -0.02 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.19 Total: -6.68 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.21 Total: -36.79 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.08 Total: 18.50 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.86 -5.55 -34.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.910 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds