Wall clock time and date at job start Mon Mar 30 2020 02:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.29356 * 2 1 4 4 C 1.52913 * 109.30195 * 240.40798 * 2 1 3 5 5 H 1.08999 * 109.60390 * 308.85657 * 4 2 1 6 6 C 1.50703 * 109.60038 * 69.18010 * 4 2 1 7 7 H 1.08002 * 120.00299 * 27.97147 * 6 4 2 8 8 C 1.37881 * 119.99987 * 207.97207 * 6 4 2 9 9 N 1.31519 * 119.99876 * 353.31281 * 8 6 4 10 10 Si 1.86790 * 120.00202 * 173.31811 * 8 6 4 11 11 H 1.48507 * 109.47431 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47295 * 239.99809 * 10 8 6 13 13 H 1.48504 * 109.47584 * 119.99870 * 10 8 6 14 14 C 1.53342 * 108.67611 * 188.93110 * 4 2 1 15 15 C 1.53066 * 108.43480 * 67.51716 * 14 4 2 16 16 C 1.50171 * 109.89497 * 311.11758 * 15 14 4 17 17 O 1.21277 * 118.24322 * 197.56356 * 16 15 14 18 18 N 1.33349 * 123.51012 * 17.57559 * 16 15 14 19 19 C 1.46497 * 117.94985 * 177.77800 * 18 16 15 20 20 H 1.09000 * 109.46815 * 179.59178 * 1 2 3 21 21 H 1.08999 * 109.46958 * 299.58547 * 1 2 3 22 22 H 1.08995 * 109.47078 * 59.59270 * 1 2 3 23 23 H 0.97003 * 119.99865 * 354.56346 * 9 8 6 24 24 H 1.08996 * 109.67679 * 187.26675 * 14 4 2 25 25 H 1.09001 * 109.67801 * 307.80626 * 14 4 2 26 26 H 1.09002 * 109.39897 * 190.98000 * 15 14 4 27 27 H 1.09005 * 109.32606 * 71.20090 * 15 14 4 28 28 H 1.08990 * 109.47581 * 269.98290 * 19 18 16 29 29 H 1.09003 * 109.46481 * 29.98491 * 19 18 16 30 30 H 1.08997 * 109.47411 * 149.98199 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0355 -0.7127 -1.2549 5 1 1.5484 -1.6836 -1.3454 6 6 1.7264 0.1233 -2.4702 7 1 1.6524 1.1972 -2.3824 8 6 1.5379 -0.4829 -3.6942 9 7 1.7565 -1.7727 -3.8298 10 14 0.9724 0.5277 -5.1597 11 1 0.7981 1.9436 -4.7472 12 1 -0.3210 -0.0048 -5.6588 13 1 1.9899 0.4476 -6.2385 14 6 3.5522 -0.9034 -1.1341 15 6 3.8263 -1.9003 -0.0054 16 6 3.0503 -1.5110 1.2200 17 8 3.3859 -1.9826 2.2857 18 7 2.0118 -0.6747 1.1989 19 6 1.3115 -0.4177 2.4597 20 1 -0.3633 -1.0277 -0.0073 21 1 -0.3633 0.5074 0.8937 22 1 -0.3633 0.5201 -0.8863 23 1 2.1251 -2.2824 -3.0913 24 1 3.9491 -1.2923 -2.0718 25 1 4.0249 0.0512 -0.9027 26 1 4.8915 -1.9017 0.2257 27 1 3.5236 -2.8979 -0.3238 28 1 0.5065 -1.1422 2.5824 29 1 2.0122 -0.5091 3.2896 30 1 0.8948 0.5893 2.4451 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259480840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:54 Heat of formation + Delta-G solvation = -71.878931 kcal Electronic energy + Delta-G solvation = -13153.462938 eV Core-core repulsion = 10947.163543 eV Total energy + Delta-G solvation = -2206.299395 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.55266 -38.21478 -35.84682 -33.91360 -32.13204 -28.48626 -27.90619 -25.80943 -23.29761 -22.82765 -19.65802 -19.03299 -17.51258 -17.14492 -16.51963 -15.62308 -15.57755 -15.43731 -14.31974 -14.12992 -13.82681 -13.54602 -13.43161 -13.12094 -12.73898 -12.61634 -12.52555 -12.26024 -11.88180 -11.73900 -11.45626 -10.70594 -10.58730 -10.39356 -9.68777 -8.54793 -6.26834 1.55679 1.60272 1.66407 1.82298 2.11603 2.62219 3.24310 3.63040 3.94144 4.07931 4.14721 4.33651 4.40618 4.50763 4.56267 4.63547 4.81476 4.84724 4.93490 5.04035 5.07746 5.30554 5.41464 5.56039 5.60248 6.02463 6.28296 6.45910 6.69251 7.10184 7.52078 8.84725 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051578 B = 0.011656 C = 0.010113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.739020 B = 2401.658795 C = 2768.048329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.151 3.849 3 H 0.068 0.932 4 C 0.021 3.979 5 H 0.012 0.988 6 C -0.589 4.589 7 H 0.055 0.945 8 C -0.024 4.024 9 N -0.939 5.939 10 Si 1.111 2.889 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.288 1.288 14 C -0.107 4.107 15 C -0.131 4.131 16 C 0.513 3.487 17 O -0.605 6.605 18 N -0.599 5.599 19 C 0.074 3.926 20 H 0.039 0.961 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.261 0.739 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 4.867 6.049 7.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.048 3.952 3 H 0.086 0.914 4 C 0.002 3.998 5 H 0.030 0.970 6 C -0.627 4.627 7 H 0.073 0.927 8 C -0.223 4.223 9 N -0.576 5.576 10 Si 0.935 3.065 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.214 1.214 14 C -0.145 4.145 15 C -0.170 4.170 16 C 0.303 3.697 17 O -0.489 6.489 18 N -0.330 5.330 19 C -0.068 4.068 20 H 0.058 0.942 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.903 4.550 4.995 7.020 hybrid contribution 0.593 -0.278 1.399 1.545 sum -1.310 4.272 6.395 7.801 Atomic orbital electron populations 1.21965 0.93392 1.01523 1.02879 1.21152 0.95595 0.95463 0.82969 0.91366 1.19182 0.92020 0.95793 0.92827 0.96965 1.22062 1.51980 0.94584 0.94078 0.92710 1.27011 0.94640 0.97196 1.03465 1.70844 1.42973 1.08329 1.35460 0.82996 0.76413 0.74452 0.72684 1.19212 1.21054 1.21407 1.21769 0.99353 0.97404 0.95983 1.21672 1.00985 1.01342 0.93025 1.20451 0.80469 0.78031 0.90777 1.90598 1.69672 1.56014 1.32575 1.47642 1.30196 1.44219 1.10919 1.21793 0.97021 1.02463 0.85514 0.94181 0.90372 0.91083 0.92871 0.93295 0.92410 0.87728 0.89120 0.92334 0.91398 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.64 71.98 0.62 -4.04 16 2 C 0.15 5.65 2.72 45.10 0.12 5.77 16 3 H 0.07 2.51 8.11 -2.39 -0.02 2.49 16 4 C 0.02 0.95 1.22 -11.45 -0.01 0.93 16 5 H 0.01 0.62 6.96 -2.39 -0.02 0.60 16 6 C -0.59 -29.32 7.48 25.60 0.19 -29.13 16 7 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 8 C -0.02 -1.27 5.45 84.65 0.46 -0.80 16 9 N -0.94 -53.67 13.56 21.45 0.29 -53.38 16 10 Si 1.11 46.87 29.91 68.60 2.05 48.92 16 11 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 14 C -0.11 -4.46 5.18 30.73 0.16 -4.31 16 15 C -0.13 -4.93 6.03 29.70 0.18 -4.75 16 16 C 0.51 20.49 7.47 87.71 0.66 21.15 16 17 O -0.60 -26.62 16.18 -3.02 -0.05 -26.67 16 18 N -0.60 -21.69 3.10 -827.32 -2.57 -24.26 16 19 C 0.07 2.14 9.02 127.77 1.15 3.29 16 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.08 2.03 6.62 -2.39 -0.02 2.01 16 22 H 0.07 2.52 7.52 -2.39 -0.02 2.50 16 23 H 0.26 15.01 6.53 -92.71 -0.61 14.40 16 24 H 0.05 2.22 7.87 -2.39 -0.02 2.20 16 25 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 26 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.09 3.41 8.14 -2.38 -0.02 3.40 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.05 7.13 -2.39 -0.02 2.03 16 30 H 0.09 2.16 7.10 -2.39 -0.02 2.15 16 Total: -1.00 -60.69 243.65 4.53 -56.16 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.27 Total: 11.11 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 3.53 Total: -11.88 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.28 Total: -77.64 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.05 Total: 48.92 kcal Total: -60.69 4.53 -56.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.716 kcal (2) G-P(sol) polarization free energy of solvation -60.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds