Wall clock time and date at job start Mon Mar 30 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.49463 * 2 1 4 4 C 1.53307 * 109.48037 * 120.03024 * 2 1 3 5 5 C 1.51439 * 108.24124 * 173.77317 * 4 2 1 6 6 O 1.20748 * 121.10962 * 130.95598 * 5 4 2 7 7 C 1.51442 * 117.77574 * 310.97421 * 5 4 2 8 8 H 1.08999 * 109.70868 * 289.30020 * 7 5 4 9 9 C 1.50697 * 109.70600 * 168.71387 * 7 5 4 10 10 H 1.07996 * 120.00354 * 239.99986 * 9 7 5 11 11 C 1.37883 * 119.99958 * 60.00274 * 9 7 5 12 12 N 1.31512 * 119.99681 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00115 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47214 * 59.99678 * 13 11 9 15 15 H 1.48496 * 109.47115 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46704 * 299.99523 * 13 11 9 17 17 C 1.53304 * 108.24119 * 49.02990 * 7 5 4 18 18 N 1.46820 * 109.48757 * 239.95807 * 2 1 3 19 19 C 1.46906 * 110.99637 * 50.27079 * 18 2 1 20 20 H 1.08994 * 109.47685 * 293.50003 * 1 2 3 21 21 H 1.09002 * 109.47018 * 53.50098 * 1 2 3 22 22 H 1.09002 * 109.47046 * 173.49232 * 1 2 3 23 23 H 1.08996 * 109.70428 * 54.08850 * 4 2 1 24 24 H 1.08994 * 109.70815 * 293.46174 * 4 2 1 25 25 H 0.97008 * 119.99927 * 180.02562 * 12 11 9 26 26 H 1.08995 * 109.48580 * 66.18428 * 17 7 5 27 27 H 1.09003 * 109.47536 * 186.21520 * 17 7 5 28 28 H 1.09011 * 109.46927 * 178.26685 * 19 18 2 29 29 H 1.09001 * 109.47234 * 298.26291 * 19 18 2 30 30 H 1.08999 * 109.47223 * 58.26755 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7233 1.2513 5 6 3.5473 -0.8434 1.1473 6 8 4.2634 -0.5257 2.0662 7 6 4.1251 -1.3749 -0.1477 8 1 3.9045 -2.4383 -0.2396 9 6 5.6169 -1.1621 -0.1636 10 1 6.0682 -0.5589 -0.9375 11 6 6.4058 -1.7375 0.8099 12 7 5.8562 -2.4715 1.7526 13 14 8.2551 -1.4743 0.7899 14 1 8.5498 -0.0231 0.9007 15 1 8.8697 -2.1926 1.9351 16 1 8.8157 -1.9977 -0.4818 17 6 3.4814 -0.6100 -1.3100 18 7 2.0198 -0.6929 -1.1982 19 6 1.3690 -0.1747 -2.4089 20 1 -0.3634 0.4097 0.9423 21 1 -0.3633 0.6113 -0.8261 22 1 -0.3633 -1.0211 -0.1165 23 1 1.5964 -1.7167 1.3091 24 1 1.7787 -0.1500 2.1403 25 1 6.4111 -2.8761 2.4378 26 1 3.7902 0.4346 -1.2732 27 1 3.7995 -1.0501 -2.2551 28 1 1.7723 -0.6837 -3.2845 29 1 0.2951 -0.3517 -2.3484 30 1 1.5567 0.8958 -2.4925 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259580199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:27 Heat of formation + Delta-G solvation = -33.076707 kcal Electronic energy + Delta-G solvation = -13108.055186 eV Core-core repulsion = 10903.438382 eV Total energy + Delta-G solvation = -2204.616804 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.93490 -36.56341 -33.12718 -31.62332 -30.55058 -27.20374 -25.41497 -23.80142 -21.76815 -20.09435 -18.00354 -16.34959 -15.40966 -14.54358 -14.49850 -14.37786 -13.86327 -13.39040 -12.90550 -12.62042 -12.13716 -11.86715 -11.60200 -11.50672 -11.06257 -10.89611 -10.71743 -10.53747 -10.47311 -10.28417 -9.50323 -9.20430 -8.32187 -7.79708 -7.75852 -5.94882 -3.98438 3.38632 3.43171 3.44919 3.68261 4.36788 4.55137 5.20146 5.29837 5.41713 5.55114 5.63919 5.76291 5.86546 5.92075 6.04528 6.11986 6.16437 6.25138 6.30611 6.41074 6.58231 6.73922 7.34110 7.44410 7.59835 7.69677 7.97461 8.32599 8.96408 9.35081 9.67601 11.16656 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057572 B = 0.011472 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.234431 B = 2440.062157 C = 2772.221957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.092 3.908 3 H 0.037 0.963 4 C -0.168 4.168 5 C 0.355 3.645 6 O -0.426 6.426 7 C 0.015 3.985 8 H 0.063 0.937 9 C -0.533 4.533 10 H 0.057 0.943 11 C 0.081 3.919 12 N -0.869 5.869 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.072 3.928 18 N -0.544 5.544 19 C 0.025 3.975 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 3.489 -4.987 11.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 H 0.055 0.945 4 C -0.207 4.207 5 C 0.226 3.774 6 O -0.295 6.295 7 C -0.005 4.005 8 H 0.081 0.919 9 C -0.571 4.571 10 H 0.075 0.925 11 C -0.124 4.124 12 N -0.504 5.504 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.055 4.055 18 N -0.269 5.269 19 C -0.123 4.123 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.853 3.064 -4.263 10.293 hybrid contribution 1.074 0.906 -0.028 1.405 sum -7.779 3.971 -4.291 9.731 Atomic orbital electron populations 1.21933 0.94787 1.02347 1.01217 1.21461 0.94610 0.95153 0.90396 0.94538 1.22593 0.99245 1.02012 0.96831 1.25286 0.87902 0.73784 0.90425 1.90232 1.63648 1.35795 1.39868 1.19385 0.95323 0.97071 0.88673 0.91935 1.20685 0.90031 1.33505 1.12833 0.92460 1.24852 0.98474 0.94302 0.94762 1.69914 1.35532 1.31536 1.13446 0.86625 0.85471 0.78343 0.77264 1.20314 1.21336 1.20332 1.22229 0.84001 0.98687 1.00579 1.61898 1.07469 1.56013 1.01553 1.22365 0.99628 0.97198 0.93122 0.92419 0.92887 0.91658 0.89233 0.91102 0.92969 0.95646 0.91098 0.91747 0.91645 0.96391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.09 1.56 2.51 -67.60 -0.17 1.39 16 3 H 0.04 0.64 8.10 -51.93 -0.42 0.22 16 4 C -0.17 -3.28 5.64 -27.36 -0.15 -3.43 16 5 C 0.35 8.95 6.20 -28.31 -0.18 8.78 16 6 O -0.43 -12.44 14.82 6.01 0.09 -12.35 16 7 C 0.01 0.37 2.56 -92.40 -0.24 0.13 16 8 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 9 C -0.53 -15.04 8.34 -34.44 -0.29 -15.33 16 10 H 0.06 1.57 7.75 -52.49 -0.41 1.17 16 11 C 0.08 2.36 4.75 -17.82 -0.08 2.28 16 12 N -0.87 -26.33 11.32 55.43 0.63 -25.70 16 13 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.07 1.49 4.75 -3.71 -0.02 1.47 16 18 N -0.54 -9.61 4.69 -234.62 -1.10 -10.71 16 19 C 0.03 0.35 8.88 60.07 0.53 0.88 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.60 6.77 -51.93 -0.35 0.25 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.07 1.39 7.99 -51.93 -0.41 0.97 16 28 H 0.06 0.84 8.01 -51.92 -0.42 0.43 16 29 H 0.06 0.79 6.45 -51.93 -0.33 0.45 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 244.01 15.07 3.68 3.68 Total: -1.00 -31.51 244.01 -6.45 -37.95 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -4.44 Total: -4.77 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.28 Total: -5.40 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.47 Total: -36.41 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.51 -6.45 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.875 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds