Wall clock time and date at job start Mon Mar 30 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.49463 * 2 1 4 4 C 1.53307 * 109.48037 * 120.03024 * 2 1 3 5 5 C 1.51439 * 108.24124 * 173.77317 * 4 2 1 6 6 O 1.20748 * 121.10962 * 130.95598 * 5 4 2 7 7 C 1.51442 * 117.77574 * 310.97421 * 5 4 2 8 8 H 1.08999 * 109.70868 * 289.30020 * 7 5 4 9 9 C 1.50697 * 109.70600 * 168.71387 * 7 5 4 10 10 H 1.07996 * 120.00354 * 239.99986 * 9 7 5 11 11 C 1.37883 * 119.99958 * 60.00274 * 9 7 5 12 12 N 1.31512 * 119.99681 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00115 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47214 * 59.99678 * 13 11 9 15 15 H 1.48496 * 109.47115 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46704 * 299.99523 * 13 11 9 17 17 C 1.53304 * 108.24119 * 49.02990 * 7 5 4 18 18 N 1.46820 * 109.48757 * 239.95807 * 2 1 3 19 19 C 1.46906 * 110.99637 * 50.27079 * 18 2 1 20 20 H 1.08994 * 109.47685 * 293.50003 * 1 2 3 21 21 H 1.09002 * 109.47018 * 53.50098 * 1 2 3 22 22 H 1.09002 * 109.47046 * 173.49232 * 1 2 3 23 23 H 1.08996 * 109.70428 * 54.08850 * 4 2 1 24 24 H 1.08994 * 109.70815 * 293.46174 * 4 2 1 25 25 H 0.97008 * 119.99927 * 180.02562 * 12 11 9 26 26 H 1.08995 * 109.48580 * 66.18428 * 17 7 5 27 27 H 1.09003 * 109.47536 * 186.21520 * 17 7 5 28 28 H 1.09011 * 109.46927 * 178.26685 * 19 18 2 29 29 H 1.09001 * 109.47234 * 298.26291 * 19 18 2 30 30 H 1.08999 * 109.47223 * 58.26755 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7233 1.2513 5 6 3.5473 -0.8434 1.1473 6 8 4.2634 -0.5257 2.0662 7 6 4.1251 -1.3749 -0.1477 8 1 3.9045 -2.4383 -0.2396 9 6 5.6169 -1.1621 -0.1636 10 1 6.0682 -0.5589 -0.9375 11 6 6.4058 -1.7375 0.8099 12 7 5.8562 -2.4715 1.7526 13 14 8.2551 -1.4743 0.7899 14 1 8.5498 -0.0231 0.9007 15 1 8.8697 -2.1926 1.9351 16 1 8.8157 -1.9977 -0.4818 17 6 3.4814 -0.6100 -1.3100 18 7 2.0198 -0.6929 -1.1982 19 6 1.3690 -0.1747 -2.4089 20 1 -0.3634 0.4097 0.9423 21 1 -0.3633 0.6113 -0.8261 22 1 -0.3633 -1.0211 -0.1165 23 1 1.5964 -1.7167 1.3091 24 1 1.7787 -0.1500 2.1403 25 1 6.4111 -2.8761 2.4378 26 1 3.7902 0.4346 -1.2732 27 1 3.7995 -1.0501 -2.2551 28 1 1.7723 -0.6837 -3.2845 29 1 0.2951 -0.3517 -2.3484 30 1 1.5567 0.8958 -2.4925 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259580199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:27 Heat of formation + Delta-G solvation = -55.159548 kcal Electronic energy + Delta-G solvation = -13109.012769 eV Core-core repulsion = 10903.438382 eV Total energy + Delta-G solvation = -2205.574388 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63852 -38.32178 -35.14430 -33.17452 -32.33479 -28.75896 -26.90305 -25.53907 -23.52306 -21.54724 -19.81732 -18.45428 -17.00963 -16.30926 -16.21321 -16.04928 -15.46642 -15.21666 -14.61753 -14.10977 -13.77933 -13.33056 -13.06144 -12.82762 -12.71982 -12.67819 -12.47957 -12.28820 -12.04431 -11.80730 -11.48409 -11.16640 -10.52219 -9.71995 -9.18772 -8.14682 -6.23596 1.37515 1.41552 1.47650 1.72028 2.42096 3.04450 3.19696 3.74085 3.98795 4.19253 4.26857 4.38759 4.53428 4.64963 4.71927 4.77693 4.85626 4.96653 5.00978 5.06039 5.15093 5.37656 5.44384 5.57870 5.74001 6.05903 6.25080 6.32987 6.78720 7.38131 7.46182 8.96160 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057572 B = 0.011472 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.234431 B = 2440.062157 C = 2772.221957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.092 3.908 3 H 0.030 0.970 4 C -0.157 4.157 5 C 0.345 3.655 6 O -0.477 6.477 7 C 0.003 3.997 8 H 0.039 0.961 9 C -0.550 4.550 10 H 0.057 0.943 11 C 0.026 3.974 12 N -0.902 5.902 13 Si 0.956 3.044 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.261 1.261 17 C 0.087 3.913 18 N -0.552 5.552 19 C 0.024 3.976 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.257 0.743 26 H 0.017 0.983 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 4.210 -6.156 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.016 4.016 3 H 0.048 0.952 4 C -0.196 4.196 5 C 0.220 3.780 6 O -0.350 6.350 7 C -0.017 4.017 8 H 0.056 0.944 9 C -0.588 4.588 10 H 0.076 0.924 11 C -0.175 4.175 12 N -0.538 5.538 13 Si 0.781 3.219 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.185 1.185 17 C -0.041 4.041 18 N -0.277 5.277 19 C -0.123 4.123 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.117 0.883 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.306 3.787 -5.474 12.268 hybrid contribution 1.475 0.678 0.293 1.649 sum -8.831 4.465 -5.181 11.170 Atomic orbital electron populations 1.21874 0.90995 1.03327 1.03096 1.21547 0.97440 0.93997 0.88660 0.95170 1.22500 0.94504 1.03302 0.99274 1.25832 0.90755 0.72077 0.89316 1.90201 1.65624 1.38160 1.41003 1.19400 0.94669 0.96332 0.91268 0.94355 1.21137 0.92093 1.32958 1.12570 0.92429 1.25696 1.03056 0.94221 0.94553 1.70049 1.36848 1.32802 1.14145 0.85662 0.80261 0.78096 0.77891 1.20289 1.21165 1.18549 1.21924 0.86249 0.97235 0.98711 1.61844 1.05425 1.56992 1.03479 1.22486 1.00800 0.97596 0.91415 0.90915 0.90659 0.91180 0.88260 0.89797 0.93425 0.96510 0.90337 0.91006 0.88976 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.37 71.98 0.60 -2.33 16 2 C 0.09 2.88 2.51 45.03 0.11 2.99 16 3 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 4 C -0.16 -5.96 5.64 30.19 0.17 -5.79 16 5 C 0.35 17.69 6.20 29.57 0.18 17.87 16 6 O -0.48 -28.66 14.82 -1.42 -0.02 -28.68 16 7 C 0.00 0.13 2.56 -11.95 -0.03 0.10 16 8 H 0.04 2.15 8.14 -2.39 -0.02 2.14 16 9 C -0.55 -31.67 8.34 25.60 0.21 -31.46 16 10 H 0.06 3.20 7.75 -2.91 -0.02 3.18 16 11 C 0.03 1.56 4.75 84.66 0.40 1.96 16 12 N -0.90 -56.24 11.32 21.45 0.24 -56.00 16 13 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 14 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 15 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 17 C 0.09 3.53 4.75 86.42 0.41 3.94 16 18 N -0.55 -18.25 4.69 -896.21 -4.20 -22.45 16 19 C 0.02 0.59 8.88 127.69 1.13 1.72 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 1.33 6.77 -2.39 -0.02 1.31 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 23 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 24 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 26 H 0.02 0.70 8.10 -2.39 -0.02 0.68 16 27 H 0.08 3.02 7.99 -2.39 -0.02 3.00 16 28 H 0.07 1.64 8.01 -2.38 -0.02 1.62 16 29 H 0.09 1.77 6.45 -2.39 -0.02 1.75 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -69.55 244.01 2.34 -67.21 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.10 Total: 2.43 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 3.20 Total: -10.98 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -3.96 Total: -78.45 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.02 Total: -28.68 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -69.55 2.34 -67.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.049 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds