Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49689 * 2 1 4 4 C 1.53306 * 109.48180 * 239.96369 * 2 1 3 5 5 C 1.51432 * 108.24265 * 186.23116 * 4 2 1 6 6 O 1.20757 * 121.11372 * 229.00526 * 5 4 2 7 7 C 1.51441 * 117.77997 * 49.02916 * 5 4 2 8 8 H 1.08996 * 109.71296 * 70.69790 * 7 5 4 9 9 C 1.50698 * 109.70707 * 191.28606 * 7 5 4 10 10 H 1.08005 * 119.99819 * 119.99935 * 9 7 5 11 11 C 1.37875 * 120.00046 * 299.99276 * 9 7 5 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.53304 * 108.23967 * 310.96950 * 7 5 4 18 18 N 1.46828 * 109.39656 * 53.79684 * 17 7 5 19 19 C 1.46902 * 110.99713 * 170.24901 * 18 17 7 20 20 H 1.09006 * 109.47349 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47246 * 300.03567 * 1 2 3 22 22 H 1.08997 * 109.47463 * 60.03638 * 1 2 3 23 23 H 1.08997 * 109.70968 * 66.53981 * 4 2 1 24 24 H 1.09002 * 109.74080 * 305.93310 * 4 2 1 25 25 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 26 26 H 1.08995 * 109.48025 * 173.76893 * 17 7 5 27 27 H 1.09004 * 109.48245 * 293.81813 * 17 7 5 28 28 H 1.09004 * 109.47029 * 184.68728 * 19 18 17 29 29 H 1.09001 * 109.47067 * 304.68091 * 19 18 17 30 30 H 1.08997 * 109.47644 * 64.68660 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2512 5 6 3.5472 -0.8436 -1.1472 6 8 4.2634 -0.5267 -2.0663 7 6 4.1251 -1.3750 0.1479 8 1 3.9044 -2.4385 0.2398 9 6 5.6169 -1.1623 0.1637 10 1 6.0681 -0.5591 0.9377 11 6 6.4057 -1.7378 -0.8097 12 7 5.8562 -2.4719 -1.7524 13 14 8.2549 -1.4747 -0.7896 14 1 8.8697 -2.1931 -1.9348 15 1 8.8156 -1.9979 0.4821 16 1 8.5498 -0.0235 -0.9005 17 6 3.4814 -0.6102 1.3101 18 7 2.0197 -0.6930 1.1983 19 6 1.3690 -0.1746 2.4090 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5144 0.8896 22 1 -0.3634 0.5132 -0.8903 23 1 1.7787 -0.1502 -2.1403 24 1 1.5964 -1.7168 -1.3097 25 1 4.8960 -2.6089 -1.7626 26 1 3.7992 -1.0503 2.2552 27 1 3.7902 0.4346 1.2731 28 1 0.2918 -0.3239 2.3348 29 1 1.7499 -0.7051 3.2817 30 1 1.5822 0.8896 2.5089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259580201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -35.155645 kcal Electronic energy + Delta-G solvation = -13158.478534 eV Core-core repulsion = 10953.771581 eV Total energy + Delta-G solvation = -2204.706953 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.21506 -36.90317 -33.37615 -31.71890 -30.54113 -27.13447 -25.40846 -23.61621 -22.07301 -20.19869 -18.32985 -16.77634 -15.48114 -14.82524 -14.64385 -14.09964 -13.97163 -13.63913 -13.12071 -12.87205 -12.16972 -11.86797 -11.77570 -11.50745 -11.30196 -10.87823 -10.82688 -10.64061 -10.39393 -10.08177 -9.89290 -8.72057 -8.26748 -8.01573 -7.91273 -6.27353 -4.00211 3.30885 3.48674 3.53395 3.70399 4.26600 4.62762 5.05221 5.16608 5.36522 5.47624 5.52954 5.68123 5.74009 5.80236 5.91731 6.01263 6.03507 6.14819 6.16288 6.27186 6.43240 6.56061 7.04116 7.22501 7.46821 7.51241 8.12620 8.45556 8.83118 9.02586 9.74469 11.11797 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057668 B = 0.011532 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.420014 B = 2427.499474 C = 2758.024001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 H 0.038 0.962 4 C -0.167 4.167 5 C 0.340 3.660 6 O -0.431 6.431 7 C -0.001 4.001 8 H 0.055 0.945 9 C -0.608 4.608 10 H 0.051 0.949 11 C 0.035 3.965 12 N -0.887 5.887 13 Si 1.071 2.929 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.289 1.289 17 C 0.080 3.920 18 N -0.546 5.546 19 C 0.024 3.976 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.266 0.734 26 H 0.073 0.927 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 3.840 5.522 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 H 0.056 0.944 4 C -0.206 4.206 5 C 0.212 3.788 6 O -0.301 6.301 7 C -0.020 4.020 8 H 0.072 0.928 9 C -0.646 4.646 10 H 0.070 0.930 11 C -0.172 4.172 12 N -0.520 5.520 13 Si 0.899 3.101 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.216 1.216 17 C -0.048 4.048 18 N -0.271 5.271 19 C -0.124 4.124 20 H 0.083 0.917 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.723 3.151 4.163 9.322 hybrid contribution -1.404 1.269 0.949 2.117 sum -9.127 4.420 5.111 11.356 Atomic orbital electron populations 1.21954 0.94539 1.02493 1.01403 1.21459 0.94813 0.95178 0.90209 0.94414 1.22572 0.98395 1.02291 0.97341 1.25782 0.88715 0.73877 0.90458 1.90330 1.63626 1.36071 1.40058 1.19554 0.96539 0.96744 0.89155 0.92753 1.21576 0.89864 1.37404 1.15752 0.93039 1.25697 1.06433 0.93028 0.92068 1.70708 1.13954 1.35254 1.32107 0.83526 0.74461 0.76173 0.75890 1.20790 1.21530 1.21555 1.22092 0.83884 0.98646 1.00134 1.61897 1.07415 1.56097 1.01672 1.22386 0.99684 0.97344 0.92997 0.91682 0.92497 0.92380 0.90735 0.88992 0.92237 0.90900 0.95461 0.91419 0.91645 0.96270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.62 37.15 0.32 -1.53 16 2 C 0.09 1.53 2.51 -67.59 -0.17 1.36 16 3 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 4 C -0.17 -3.19 5.64 -27.37 -0.15 -3.34 16 5 C 0.34 8.45 5.50 -28.31 -0.16 8.30 16 6 O -0.43 -12.51 14.60 6.00 0.09 -12.42 16 7 C 0.00 -0.02 2.25 -92.40 -0.21 -0.22 16 8 H 0.05 1.45 8.03 -51.93 -0.42 1.04 16 9 C -0.61 -17.47 8.34 -34.44 -0.29 -17.75 16 10 H 0.05 1.45 7.75 -52.48 -0.41 1.04 16 11 C 0.04 1.05 4.75 -17.82 -0.08 0.97 16 12 N -0.89 -27.93 12.53 55.43 0.69 -27.23 16 13 Si 1.07 26.32 29.90 -169.99 -5.08 21.24 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.08 1.65 4.75 -3.71 -0.02 1.64 16 18 N -0.55 -9.55 4.69 -234.62 -1.10 -10.65 16 19 C 0.02 0.33 8.92 60.07 0.54 0.87 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.64 6.32 -51.93 -0.33 0.31 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 24 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 25 H 0.27 8.36 5.77 -40.82 -0.24 8.13 16 26 H 0.07 1.45 8.01 -51.93 -0.42 1.03 16 27 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.07 0.80 6.19 -51.93 -0.32 0.47 16 29 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 241.36 15.07 3.64 3.64 Total: -1.00 -32.71 241.36 -6.28 -38.99 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -4.29 Total: -3.83 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.22 Total: -9.72 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.41 Total: -37.88 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.71 -6.28 -38.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.833 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds