Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49689 * 2 1 4 4 C 1.53306 * 109.48180 * 239.96369 * 2 1 3 5 5 C 1.51432 * 108.24265 * 186.23116 * 4 2 1 6 6 O 1.20757 * 121.11372 * 229.00526 * 5 4 2 7 7 C 1.51441 * 117.77997 * 49.02916 * 5 4 2 8 8 H 1.08996 * 109.71296 * 70.69790 * 7 5 4 9 9 C 1.50698 * 109.70707 * 191.28606 * 7 5 4 10 10 H 1.08005 * 119.99819 * 119.99935 * 9 7 5 11 11 C 1.37875 * 120.00046 * 299.99276 * 9 7 5 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.53304 * 108.23967 * 310.96950 * 7 5 4 18 18 N 1.46828 * 109.39656 * 53.79684 * 17 7 5 19 19 C 1.46902 * 110.99713 * 170.24901 * 18 17 7 20 20 H 1.09006 * 109.47349 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47246 * 300.03567 * 1 2 3 22 22 H 1.08997 * 109.47463 * 60.03638 * 1 2 3 23 23 H 1.08997 * 109.70968 * 66.53981 * 4 2 1 24 24 H 1.09002 * 109.74080 * 305.93310 * 4 2 1 25 25 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 26 26 H 1.08995 * 109.48025 * 173.76893 * 17 7 5 27 27 H 1.09004 * 109.48245 * 293.81813 * 17 7 5 28 28 H 1.09004 * 109.47029 * 184.68728 * 19 18 17 29 29 H 1.09001 * 109.47067 * 304.68091 * 19 18 17 30 30 H 1.08997 * 109.47644 * 64.68660 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2512 5 6 3.5472 -0.8436 -1.1472 6 8 4.2634 -0.5267 -2.0663 7 6 4.1251 -1.3750 0.1479 8 1 3.9044 -2.4385 0.2398 9 6 5.6169 -1.1623 0.1637 10 1 6.0681 -0.5591 0.9377 11 6 6.4057 -1.7378 -0.8097 12 7 5.8562 -2.4719 -1.7524 13 14 8.2549 -1.4747 -0.7896 14 1 8.8697 -2.1931 -1.9348 15 1 8.8156 -1.9979 0.4821 16 1 8.5498 -0.0235 -0.9005 17 6 3.4814 -0.6102 1.3101 18 7 2.0197 -0.6930 1.1983 19 6 1.3690 -0.1746 2.4090 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5144 0.8896 22 1 -0.3634 0.5132 -0.8903 23 1 1.7787 -0.1502 -2.1403 24 1 1.5964 -1.7168 -1.3097 25 1 4.8960 -2.6089 -1.7626 26 1 3.7992 -1.0503 2.2552 27 1 3.7902 0.4346 1.2731 28 1 0.2918 -0.3239 2.3348 29 1 1.7499 -0.7051 3.2817 30 1 1.5822 0.8896 2.5089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259580201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -58.443294 kcal Electronic energy + Delta-G solvation = -13159.488363 eV Core-core repulsion = 10953.771581 eV Total energy + Delta-G solvation = -2205.716782 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.96510 -38.61008 -35.42603 -33.22566 -32.33736 -28.64713 -26.85494 -25.52353 -23.81063 -21.66087 -20.15440 -18.87684 -16.94812 -16.53395 -16.30224 -15.90877 -15.67253 -15.54661 -14.75179 -14.18304 -13.90147 -13.47100 -13.22549 -12.89820 -12.75942 -12.67014 -12.39518 -12.18060 -11.99607 -11.91614 -11.66712 -10.82758 -10.50097 -9.96972 -9.30582 -8.60848 -6.32734 1.35642 1.49170 1.59547 1.76809 2.57069 2.92138 3.19026 3.55916 3.85940 4.04378 4.12249 4.25906 4.36635 4.53267 4.60523 4.67052 4.72801 4.83346 4.91110 4.94324 5.09485 5.17527 5.31468 5.35524 5.82530 6.08916 6.17607 6.21083 6.56122 7.02980 7.50381 8.79572 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057668 B = 0.011532 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.420014 B = 2427.499474 C = 2758.024001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.030 0.970 4 C -0.156 4.156 5 C 0.333 3.667 6 O -0.482 6.482 7 C -0.015 4.015 8 H 0.035 0.965 9 C -0.622 4.622 10 H 0.049 0.951 11 C -0.019 4.019 12 N -0.916 5.916 13 Si 1.113 2.887 14 H -0.286 1.286 15 H -0.261 1.261 16 H -0.279 1.279 17 C 0.094 3.906 18 N -0.552 5.552 19 C 0.023 3.977 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.253 0.747 26 H 0.078 0.922 27 H 0.016 0.984 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 4.588 6.746 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 H 0.048 0.952 4 C -0.194 4.194 5 C 0.209 3.791 6 O -0.357 6.357 7 C -0.034 4.034 8 H 0.053 0.947 9 C -0.659 4.659 10 H 0.068 0.932 11 C -0.220 4.220 12 N -0.552 5.552 13 Si 0.935 3.065 14 H -0.211 1.211 15 H -0.186 1.186 16 H -0.205 1.205 17 C -0.034 4.034 18 N -0.277 5.277 19 C -0.124 4.124 20 H 0.089 0.911 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.107 0.893 24 H 0.124 0.876 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.034 0.966 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.303 3.902 5.434 11.459 hybrid contribution -0.981 1.039 0.622 1.558 sum -10.284 4.941 6.056 12.917 Atomic orbital electron populations 1.21903 0.90641 1.03492 1.03359 1.21567 0.97710 0.93973 0.88491 0.95180 1.22503 0.93418 1.03800 0.99718 1.26233 0.91665 0.72081 0.89115 1.90301 1.65635 1.38509 1.41209 1.19593 0.95612 0.96298 0.91900 0.94707 1.22017 0.92168 1.36565 1.15184 0.93244 1.27143 1.10674 0.92461 0.91695 1.70824 1.13208 1.37484 1.33657 0.83010 0.69864 0.76663 0.76967 1.21109 1.18599 1.20517 1.21791 0.86349 0.97038 0.98221 1.61851 1.05154 1.57051 1.03650 1.22519 1.00955 0.97681 0.91290 0.91117 0.90347 0.90748 0.89313 0.87621 0.93629 0.90314 0.96576 0.88588 0.90945 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.62 71.98 0.62 -2.23 16 2 C 0.09 2.80 2.51 45.03 0.11 2.91 16 3 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 4 C -0.16 -5.75 5.64 30.18 0.17 -5.58 16 5 C 0.33 16.86 5.50 29.57 0.16 17.02 16 6 O -0.48 -28.91 14.60 -1.44 -0.02 -28.93 16 7 C -0.01 -0.76 2.25 -11.95 -0.03 -0.78 16 8 H 0.04 1.93 8.03 -2.39 -0.02 1.91 16 9 C -0.62 -36.45 8.34 25.60 0.21 -36.23 16 10 H 0.05 2.82 7.75 -2.91 -0.02 2.80 16 11 C -0.02 -1.14 4.75 84.65 0.40 -0.73 16 12 N -0.92 -59.49 12.53 21.45 0.27 -59.22 16 13 Si 1.11 53.42 29.90 68.60 2.05 55.47 16 14 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.09 3.85 4.75 86.42 0.41 4.26 16 18 N -0.55 -18.04 4.69 -896.19 -4.21 -22.24 16 19 C 0.02 0.54 8.92 127.69 1.14 1.68 16 20 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 21 H 0.08 1.34 6.32 -2.39 -0.02 1.32 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 24 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 25 H 0.25 16.57 5.77 -92.71 -0.53 16.04 16 26 H 0.08 3.07 8.01 -2.39 -0.02 3.06 16 27 H 0.02 0.68 8.10 -2.39 -0.02 0.67 16 28 H 0.10 1.78 6.19 -2.39 -0.01 1.77 16 29 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -72.89 241.36 2.64 -70.25 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.34 Total: 4.35 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.20 Total: -19.68 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -3.94 Total: -81.46 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.02 Total: -28.93 kcal Atomic # 14 Polarization: 53.42 SS G_CDS: 2.05 Total: 55.47 kcal Total: -72.89 2.64 -70.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.810 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds