Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.74098 * 2 1 4 4 N 1.47191 * 109.59974 * 120.39859 * 2 1 3 5 5 C 1.33376 * 120.43133 * 191.70232 * 4 2 1 6 6 O 1.21282 * 119.89179 * 179.71896 * 5 4 2 7 7 C 1.51422 * 120.21234 * 359.73410 * 5 4 2 8 8 C 1.53059 * 108.49071 * 288.76179 * 7 5 4 9 9 C 1.51796 * 110.74956 * 84.92603 * 8 7 5 10 10 C 1.51778 * 113.80776 * 293.18521 * 9 8 7 11 11 H 1.09000 * 109.19437 * 306.67801 * 10 9 8 12 12 C 1.50705 * 109.19482 * 187.35362 * 10 9 8 13 13 H 1.07994 * 120.00160 * 303.86077 * 12 10 9 14 14 C 1.37877 * 119.99590 * 123.86151 * 12 10 9 15 15 N 1.31516 * 119.99295 * 180.02562 * 14 12 10 16 16 Si 1.86792 * 120.00404 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.46946 * 269.99723 * 16 14 12 18 18 H 1.48499 * 109.47351 * 29.99910 * 16 14 12 19 19 H 1.48497 * 109.47327 * 150.00482 * 16 14 12 20 20 H 1.08993 * 109.47062 * 174.33410 * 1 2 3 21 21 H 1.08994 * 109.46648 * 294.34092 * 1 2 3 22 22 H 1.09000 * 109.46778 * 54.33770 * 1 2 3 23 23 H 0.97000 * 119.78533 * 11.70750 * 4 2 1 24 24 H 1.09000 * 109.63156 * 169.06566 * 7 5 4 25 25 H 1.09003 * 109.63407 * 48.46507 * 7 5 4 26 26 H 1.08998 * 109.22746 * 324.59429 * 8 7 5 27 27 H 1.08997 * 109.18685 * 205.22557 * 8 7 5 28 28 H 1.08999 * 108.61673 * 172.06337 * 9 8 7 29 29 H 1.09001 * 108.61443 * 54.29850 * 9 8 7 30 30 H 0.97006 * 119.99990 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 7 2.0238 -0.7016 1.1960 5 6 3.3113 -0.6313 1.5371 6 8 3.7066 -1.2092 2.5275 7 6 4.2809 0.1678 0.6921 8 6 4.5058 -0.5782 -0.6253 9 6 3.4234 -0.2312 -1.6314 10 6 2.0433 -0.7295 -1.2430 11 1 2.0936 -1.7983 -1.0352 12 6 1.0906 -0.4913 -2.3861 13 1 0.9647 0.5040 -2.7857 14 6 0.3798 -1.5443 -2.9218 15 7 -0.4512 -1.3365 -3.9197 16 14 0.5970 -3.2658 -2.2302 17 1 1.6905 -3.9576 -2.9588 18 1 0.9398 -3.1803 -0.7879 19 1 -0.6667 -4.0283 -2.3943 20 1 -0.3633 -1.0226 -0.1015 21 1 -0.3632 0.4236 0.9363 22 1 -0.3633 0.5991 -0.8350 23 1 1.4088 -1.2186 1.7396 24 1 5.2284 0.2711 1.2209 25 1 3.8626 1.1535 0.4881 26 1 4.4900 -1.6517 -0.4371 27 1 5.4774 -0.2998 -1.0333 28 1 3.6917 -0.6650 -2.5946 29 1 3.3840 0.8527 -1.7401 30 1 -0.9511 -2.0773 -4.2970 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259588252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = -78.252218 kcal Electronic energy + Delta-G solvation = -13238.782857 eV Core-core repulsion = 11032.207096 eV Total energy + Delta-G solvation = -2206.575761 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.17312 -38.25354 -35.04313 -34.75838 -32.58178 -29.64259 -27.57675 -25.18011 -23.20434 -21.07191 -20.47239 -19.22462 -17.85472 -17.27217 -16.49018 -15.77925 -15.33384 -14.86348 -14.71178 -14.47450 -14.12905 -13.38204 -13.26847 -12.97569 -12.85842 -12.58039 -12.36602 -11.92221 -11.75218 -11.44480 -11.15356 -10.92301 -10.74577 -10.66725 -9.87306 -8.24556 -6.23223 1.30386 1.37195 1.42206 1.70824 2.34306 2.49200 3.13699 3.64588 3.97362 4.16215 4.18900 4.43092 4.53144 4.57515 4.72123 4.87405 4.95291 5.04000 5.19727 5.30277 5.33339 5.53942 5.57302 5.66063 5.75962 5.96440 6.30709 6.49523 6.82268 7.31024 7.40134 8.91661 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040972 B = 0.013679 C = 0.013252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.221482 B = 2046.425954 C = 2112.329131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.145 3.855 3 H 0.091 0.909 4 N -0.712 5.712 5 C 0.511 3.489 6 O -0.614 6.614 7 C -0.129 4.129 8 C -0.108 4.108 9 C -0.109 4.109 10 C -0.012 4.012 11 H 0.030 0.970 12 C -0.485 4.485 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.945 5.945 16 Si 0.919 3.081 17 H -0.279 1.279 18 H -0.251 1.251 19 H -0.293 1.293 20 H 0.036 0.964 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.394 0.606 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 3.150 6.887 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 H 0.109 0.891 4 N -0.361 5.361 5 C 0.299 3.701 6 O -0.498 6.498 7 C -0.169 4.169 8 C -0.146 4.146 9 C -0.147 4.147 10 C -0.032 4.032 11 H 0.049 0.951 12 C -0.523 4.523 13 H 0.067 0.933 14 C -0.171 4.171 15 N -0.586 5.586 16 Si 0.746 3.254 17 H -0.205 1.205 18 H -0.175 1.175 19 H -0.220 1.220 20 H 0.056 0.944 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.229 0.771 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.131 2.903 7.121 9.835 hybrid contribution -0.689 -1.322 -0.064 1.492 sum 5.442 1.581 7.056 9.050 Atomic orbital electron populations 1.21730 0.93635 1.01713 1.01483 1.21662 0.95263 0.95959 0.82954 0.89105 1.46414 1.09359 1.51508 1.28827 1.21142 0.83811 0.80729 0.84386 1.90660 1.78636 1.50136 1.30329 1.22001 0.98908 0.99939 0.96051 1.21282 1.00394 0.99204 0.93692 1.21266 0.93925 1.01548 0.97985 1.19593 0.93900 0.96479 0.93180 0.95138 1.20972 1.21594 0.95077 1.14680 0.93281 1.25627 0.94912 1.01536 0.95015 1.70002 1.28856 1.32885 1.26814 0.86176 0.77127 0.81822 0.80245 1.20472 1.17535 1.22003 0.94440 0.91760 0.91149 0.77062 0.87578 0.87329 0.93921 0.88488 0.93387 0.91499 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.35 71.98 0.60 -3.83 16 2 C 0.15 4.93 2.73 44.86 0.12 5.06 16 3 H 0.09 2.73 6.71 -2.39 -0.02 2.72 16 4 N -0.71 -23.58 5.10 -442.17 -2.26 -25.83 16 5 C 0.51 17.46 7.06 88.10 0.62 18.08 16 6 O -0.61 -25.25 17.92 -3.04 -0.05 -25.30 16 7 C -0.13 -3.43 5.57 30.10 0.17 -3.27 16 8 C -0.11 -3.04 5.66 30.22 0.17 -2.87 16 9 C -0.11 -3.72 4.54 29.80 0.14 -3.59 16 10 C -0.01 -0.47 1.79 -11.94 -0.02 -0.49 16 11 H 0.03 1.33 4.36 -2.39 -0.01 1.32 16 12 C -0.48 -23.92 6.58 25.60 0.17 -23.75 16 13 H 0.05 2.67 8.06 -2.91 -0.02 2.64 16 14 C 0.03 1.41 5.47 84.65 0.46 1.87 16 15 N -0.94 -55.02 13.96 21.45 0.30 -54.72 16 16 Si 0.92 42.51 26.98 68.60 1.85 44.36 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.25 -11.00 6.34 99.48 0.63 -10.37 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 H 0.04 1.40 7.84 -2.39 -0.02 1.39 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.07 2.72 7.11 -2.39 -0.02 2.70 16 23 H 0.39 12.61 8.59 -92.71 -0.80 11.82 16 24 H 0.11 2.47 8.13 -2.39 -0.02 2.45 16 25 H 0.11 2.46 6.77 -2.39 -0.02 2.44 16 26 H 0.04 1.34 7.86 -2.39 -0.02 1.32 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.05 1.76 8.09 -2.39 -0.02 1.74 16 29 H 0.07 2.09 7.88 -2.39 -0.02 2.07 16 30 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -61.91 238.26 2.53 -59.38 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.26 Total: 14.90 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 2.43 Total: -12.79 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.96 Total: -80.55 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.85 Total: 44.36 kcal Total: -61.91 2.53 -59.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.874 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds