Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47094 * 2 1 4 4 C 1.34572 * 124.43129 * 270.07616 * 3 2 1 5 5 O 1.21276 * 124.91608 * 359.54210 * 4 3 2 6 6 C 1.51283 * 110.13813 * 179.64209 * 4 3 2 7 7 C 1.54628 * 104.19745 * 343.67762 * 6 4 3 8 8 H 1.09001 * 110.96745 * 266.67669 * 7 6 4 9 9 C 1.50694 * 110.97155 * 142.91785 * 7 6 4 10 10 H 1.08001 * 119.99817 * 247.62395 * 9 7 6 11 11 C 1.37878 * 120.00291 * 67.61767 * 9 7 6 12 12 N 1.31514 * 119.99871 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00112 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47142 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47185 * 119.99965 * 13 11 9 16 16 H 1.48504 * 109.47368 * 240.00045 * 13 11 9 17 17 C 1.46764 * 124.35348 * 89.99721 * 3 2 1 18 18 H 1.09006 * 110.24146 * 77.93105 * 17 3 2 19 19 C 1.52997 * 110.24506 * 316.02185 * 17 3 2 20 20 H 1.08998 * 109.46946 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47153 * 299.99998 * 1 2 3 22 22 H 1.09002 * 109.47153 * 59.99977 * 1 2 3 23 23 H 1.08997 * 109.47153 * 240.00002 * 2 1 3 24 24 H 1.09004 * 109.47047 * 119.99487 * 2 1 3 25 25 H 1.08997 * 110.48730 * 224.99446 * 6 4 3 26 26 H 1.09000 * 110.59522 * 102.40803 * 6 4 3 27 27 H 0.97001 * 120.00170 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.47153 * 302.62625 * 19 17 3 29 29 H 1.09001 * 109.46832 * 182.62816 * 19 17 3 30 30 H 1.09004 * 109.47261 * 62.62797 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2706 2.0991 -1.1100 5 8 2.1341 1.6937 -2.2448 6 6 2.7513 3.4840 -0.7365 7 6 2.3544 3.6351 0.7503 8 1 1.3801 4.1142 0.8472 9 6 3.4060 4.3972 1.5146 10 1 3.9942 3.8964 2.2693 11 6 3.6175 5.7338 1.2503 12 7 2.9016 6.3435 0.3308 13 14 4.9215 6.6782 2.1971 14 1 5.5832 5.7702 3.1682 15 1 5.9326 7.2116 1.2492 16 1 4.2852 7.8040 2.9273 17 6 2.2944 2.1620 1.2116 18 1 3.2494 1.8629 1.6437 19 6 1.1699 1.9720 2.2316 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8901 25 1 2.2507 4.2382 -1.3436 26 1 3.8326 3.5587 -0.8521 27 1 3.0501 7.2839 0.1451 28 1 0.2198 2.2626 1.7833 29 1 1.3640 2.5928 3.1062 30 1 1.1248 0.9251 2.5318 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259598547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = -50.412698 kcal Electronic energy + Delta-G solvation = -12979.783882 eV Core-core repulsion = 10774.415333 eV Total energy + Delta-G solvation = -2205.368549 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.61913 -36.01870 -33.91912 -31.95046 -29.86808 -28.75066 -25.69166 -22.88050 -22.65824 -20.13531 -18.46682 -16.68274 -15.76319 -15.19324 -14.74763 -14.24957 -13.44349 -13.12420 -12.86274 -12.60035 -12.29441 -12.08414 -11.94833 -11.44951 -11.14635 -11.03639 -10.81520 -10.57341 -10.45251 -10.20405 -9.38317 -9.32882 -8.79962 -8.45045 -8.00023 -6.14613 -4.19781 3.24286 3.33310 3.35743 3.45589 3.76562 4.34734 5.18602 5.20018 5.50707 5.54359 5.67326 5.76282 5.80592 5.93007 6.07162 6.16276 6.34003 6.43490 6.52290 6.63072 6.68987 6.87339 7.35120 7.40646 7.60844 7.81946 7.91531 8.22216 8.82104 9.04404 9.46200 10.95362 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052009 B = 0.010835 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.243381 B = 2583.501065 C = 2886.912961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.512 3.488 5 O -0.566 6.566 6 C -0.133 4.133 7 C 0.053 3.947 8 H 0.048 0.952 9 C -0.518 4.518 10 H 0.062 0.938 11 C 0.066 3.934 12 N -0.884 5.884 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.127 3.873 18 H 0.070 0.930 19 C -0.149 4.149 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.263 0.737 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -7.750 3.377 8.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.355 5.355 4 C 0.303 3.697 5 O -0.446 6.446 6 C -0.173 4.173 7 C 0.034 3.966 8 H 0.067 0.933 9 C -0.556 4.556 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.522 5.522 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.025 3.975 18 H 0.088 0.912 19 C -0.206 4.206 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.456 -7.862 2.712 8.672 hybrid contribution 0.650 0.569 0.496 0.996 sum -1.806 -7.293 3.207 8.169 Atomic orbital electron populations 1.22267 0.96521 1.01374 1.02731 1.21133 0.93956 0.83032 1.01890 1.48631 1.65660 1.12716 1.08451 1.21871 0.75101 0.89140 0.83628 1.90576 1.55467 1.76768 1.21768 1.22465 1.02405 0.91037 1.01416 1.19700 0.98576 0.88004 0.90360 0.93347 1.21002 1.19149 0.94551 1.20898 0.91953 1.24987 0.96099 0.97616 0.95039 1.69963 1.39593 1.11116 1.31490 0.86499 0.81539 0.79906 0.79863 1.19657 1.20948 1.20967 1.22059 0.97084 0.94188 0.84213 0.91161 1.22067 0.98731 1.00267 0.99576 0.92372 0.91987 0.92494 0.91038 0.91203 0.89210 0.89123 0.92740 0.92720 0.91092 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.09 37.16 0.37 -2.00 16 2 C 0.12 1.91 5.96 -4.04 -0.02 1.88 16 3 N -0.62 -11.96 2.80 -164.84 -0.46 -12.42 16 4 C 0.51 11.57 8.03 -10.79 -0.09 11.48 16 5 O -0.57 -14.09 17.60 5.56 0.10 -13.99 16 6 C -0.13 -3.13 5.81 -26.74 -0.16 -3.29 16 7 C 0.05 1.22 2.47 -90.14 -0.22 1.00 16 8 H 0.05 1.22 7.91 -51.93 -0.41 0.81 16 9 C -0.52 -13.07 8.39 -34.44 -0.29 -13.36 16 10 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 11 C 0.07 1.71 5.37 -17.82 -0.10 1.62 16 12 N -0.88 -24.23 12.84 55.43 0.71 -23.52 16 13 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 C 0.13 2.45 3.46 -67.01 -0.23 2.22 16 18 H 0.07 1.36 7.74 -51.93 -0.40 0.96 16 19 C -0.15 -2.41 7.85 37.16 0.29 -2.12 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.84 5.96 -51.93 -0.31 0.53 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 24 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 25 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 26 H 0.09 2.20 7.89 -51.93 -0.41 1.79 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.05 0.90 7.34 -51.93 -0.38 0.52 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 LS Contribution 250.14 15.07 3.77 3.77 Total: -1.00 -28.54 250.14 -5.69 -34.23 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.35 Total: -0.67 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.44 Total: -2.57 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.25 Total: -35.93 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.10 Total: -13.99 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.54 -5.69 -34.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.183 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds