Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47094 * 2 1 4 4 C 1.34572 * 124.43129 * 270.07616 * 3 2 1 5 5 O 1.21276 * 124.91608 * 359.54210 * 4 3 2 6 6 C 1.51283 * 110.13813 * 179.64209 * 4 3 2 7 7 C 1.54628 * 104.19745 * 343.67762 * 6 4 3 8 8 H 1.09001 * 110.96745 * 266.67669 * 7 6 4 9 9 C 1.50694 * 110.97155 * 142.91785 * 7 6 4 10 10 H 1.08001 * 119.99817 * 247.62395 * 9 7 6 11 11 C 1.37878 * 120.00291 * 67.61767 * 9 7 6 12 12 N 1.31514 * 119.99871 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00112 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47142 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47185 * 119.99965 * 13 11 9 16 16 H 1.48504 * 109.47368 * 240.00045 * 13 11 9 17 17 C 1.46764 * 124.35348 * 89.99721 * 3 2 1 18 18 H 1.09006 * 110.24146 * 77.93105 * 17 3 2 19 19 C 1.52997 * 110.24506 * 316.02185 * 17 3 2 20 20 H 1.08998 * 109.46946 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47153 * 299.99998 * 1 2 3 22 22 H 1.09002 * 109.47153 * 59.99977 * 1 2 3 23 23 H 1.08997 * 109.47153 * 240.00002 * 2 1 3 24 24 H 1.09004 * 109.47047 * 119.99487 * 2 1 3 25 25 H 1.08997 * 110.48730 * 224.99446 * 6 4 3 26 26 H 1.09000 * 110.59522 * 102.40803 * 6 4 3 27 27 H 0.97001 * 120.00170 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.47153 * 302.62625 * 19 17 3 29 29 H 1.09001 * 109.46832 * 182.62816 * 19 17 3 30 30 H 1.09004 * 109.47261 * 62.62797 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2706 2.0991 -1.1100 5 8 2.1341 1.6937 -2.2448 6 6 2.7513 3.4840 -0.7365 7 6 2.3544 3.6351 0.7503 8 1 1.3801 4.1142 0.8472 9 6 3.4060 4.3972 1.5146 10 1 3.9942 3.8964 2.2693 11 6 3.6175 5.7338 1.2503 12 7 2.9016 6.3435 0.3308 13 14 4.9215 6.6782 2.1971 14 1 5.5832 5.7702 3.1682 15 1 5.9326 7.2116 1.2492 16 1 4.2852 7.8040 2.9273 17 6 2.2944 2.1620 1.2116 18 1 3.2494 1.8629 1.6437 19 6 1.1699 1.9720 2.2316 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8901 25 1 2.2507 4.2382 -1.3436 26 1 3.8326 3.5587 -0.8521 27 1 3.0501 7.2839 0.1451 28 1 0.2198 2.2626 1.7833 29 1 1.3640 2.5928 3.1062 30 1 1.1248 0.9251 2.5318 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259598547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = -67.744157 kcal Electronic energy + Delta-G solvation = -12980.535431 eV Core-core repulsion = 10774.415333 eV Total energy + Delta-G solvation = -2206.120097 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.32989 -37.80659 -35.60134 -33.68133 -31.40112 -30.34685 -27.56253 -24.52879 -24.05427 -21.90250 -20.11208 -18.57997 -17.46085 -16.86188 -16.52992 -15.92596 -15.03851 -14.65129 -14.52406 -14.18604 -13.95412 -13.60008 -13.29654 -12.87975 -12.86531 -12.71112 -12.43131 -12.31740 -12.03414 -11.77243 -11.25236 -11.07426 -10.73125 -10.39132 -9.58656 -8.14232 -6.25036 1.45599 1.49032 1.59111 1.64558 2.21709 2.46108 3.18731 3.74940 4.03717 4.23568 4.27693 4.39845 4.51178 4.56769 4.69356 4.76692 4.87701 4.99217 5.05050 5.10343 5.30205 5.41221 5.43136 5.64585 5.83138 5.88004 6.16158 6.32326 6.84417 7.29242 7.44767 8.95970 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052009 B = 0.010835 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.243381 B = 2583.501065 C = 2886.912961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.609 5.609 4 C 0.509 3.491 5 O -0.594 6.594 6 C -0.129 4.129 7 C 0.048 3.952 8 H 0.023 0.977 9 C -0.523 4.523 10 H 0.070 0.930 11 C 0.015 3.985 12 N -0.920 5.920 13 Si 0.957 3.043 14 H -0.260 1.260 15 H -0.287 1.287 16 H -0.283 1.283 17 C 0.133 3.867 18 H 0.078 0.922 19 C -0.140 4.140 20 H 0.092 0.908 21 H 0.067 0.933 22 H 0.029 0.971 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.262 0.738 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -9.368 5.231 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.007 4.007 3 N -0.341 5.341 4 C 0.299 3.701 5 O -0.477 6.477 6 C -0.169 4.169 7 C 0.029 3.971 8 H 0.041 0.959 9 C -0.562 4.562 10 H 0.089 0.911 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.783 3.217 14 H -0.183 1.183 15 H -0.213 1.213 16 H -0.209 1.209 17 C 0.030 3.970 18 H 0.096 0.904 19 C -0.198 4.198 20 H 0.110 0.890 21 H 0.086 0.914 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.318 -9.514 4.608 10.822 hybrid contribution 0.589 1.040 -0.081 1.198 sum -1.729 -8.474 4.527 9.762 Atomic orbital electron populations 1.22219 0.95037 1.03313 1.01704 1.21519 0.95157 0.80565 1.03464 1.48673 1.64233 1.14054 1.07163 1.21585 0.75471 0.88999 0.84064 1.90551 1.57057 1.77177 1.22935 1.22293 1.01319 0.91689 1.01629 1.19617 0.96791 0.90698 0.89970 0.95858 1.21349 1.19219 0.94825 1.20758 0.91144 1.25775 0.98013 0.98792 0.95889 1.70094 1.41324 1.11285 1.33132 0.85511 0.78955 0.78620 0.78610 1.18335 1.21332 1.20888 1.21983 0.99013 0.91320 0.84667 0.90364 1.22001 0.96912 1.02590 0.98314 0.88976 0.91365 0.95148 0.91522 0.87575 0.91864 0.90355 0.92924 0.93167 0.90949 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.09 71.98 0.73 -3.35 16 2 C 0.11 3.18 5.96 86.38 0.51 3.69 16 3 N -0.61 -22.46 2.80 -793.95 -2.22 -24.68 16 4 C 0.51 23.15 8.03 87.87 0.71 23.86 16 5 O -0.59 -30.00 17.60 -3.02 -0.05 -30.05 16 6 C -0.13 -6.26 5.81 30.59 0.18 -6.08 16 7 C 0.05 2.26 2.47 -10.48 -0.03 2.23 16 8 H 0.02 1.20 7.91 -2.39 -0.02 1.18 16 9 C -0.52 -26.24 8.39 25.60 0.21 -26.03 16 10 H 0.07 3.35 7.60 -2.91 -0.02 3.33 16 11 C 0.02 0.78 5.37 84.65 0.45 1.24 16 12 N -0.92 -51.53 12.84 21.45 0.28 -51.26 16 13 Si 0.96 41.24 29.54 68.60 2.03 43.26 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 C 0.13 4.86 3.46 45.44 0.16 5.02 16 18 H 0.08 2.80 7.74 -2.38 -0.02 2.79 16 19 C -0.14 -4.12 7.85 71.98 0.56 -3.55 16 20 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.07 1.61 5.96 -2.39 -0.01 1.59 16 22 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.97 7.93 -2.39 -0.02 1.95 16 24 H 0.11 2.26 7.92 -2.39 -0.02 2.24 16 25 H 0.06 3.35 8.14 -2.39 -0.02 3.34 16 26 H 0.08 3.94 7.89 -2.39 -0.02 3.92 16 27 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.05 1.52 7.34 -2.39 -0.02 1.50 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 1.77 7.45 -2.38 -0.02 1.76 16 Total: -1.00 -61.80 250.14 4.62 -57.17 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.11 Total: 8.53 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 3.49 Total: -2.98 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.95 Total: -75.94 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.05 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -61.80 4.62 -57.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.570 kcal (2) G-P(sol) polarization free energy of solvation -61.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds