Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.41106 * 110.99677 * 2 1 4 4 C 1.52389 * 114.68447 * 171.59244 * 3 2 1 5 5 C 1.51153 * 109.56765 * 85.83958 * 4 3 2 6 6 C 1.54164 * 109.62739 * 267.38063 * 5 4 3 7 7 C 1.51746 * 110.70824 * 39.80974 * 6 5 4 8 8 O 1.20764 * 118.89899 * 221.12480 * 7 6 5 9 9 C 1.48556 * 110.99602 * 234.56110 * 2 1 3 10 10 H 1.09003 * 109.44616 * 76.22002 * 9 2 1 11 11 C 1.50700 * 109.44690 * 316.28195 * 9 2 1 12 12 H 1.08001 * 119.99710 * 294.96341 * 11 9 2 13 13 C 1.37877 * 120.00224 * 114.96599 * 11 9 2 14 14 N 1.31506 * 120.00046 * 179.72380 * 13 11 9 15 15 Si 1.86804 * 119.99722 * 359.97438 * 13 11 9 16 16 H 1.48497 * 109.46852 * 90.00224 * 15 13 11 17 17 H 1.48499 * 109.46905 * 210.00202 * 15 13 11 18 18 H 1.48503 * 109.47171 * 330.00368 * 15 13 11 19 19 H 1.09003 * 109.47373 * 191.42176 * 1 2 3 20 20 H 1.09009 * 109.47232 * 311.41738 * 1 2 3 21 21 H 1.08996 * 109.47661 * 71.41636 * 1 2 3 22 22 H 1.09003 * 108.43873 * 292.93635 * 3 2 1 23 23 H 1.09000 * 108.44535 * 50.40528 * 3 2 1 24 24 H 1.09005 * 109.45500 * 205.87174 * 4 3 2 25 25 H 1.09007 * 109.45393 * 325.80608 * 4 3 2 26 26 H 1.08994 * 109.44567 * 27.42646 * 5 4 3 27 27 H 1.09000 * 109.44191 * 147.36886 * 5 4 3 28 28 H 1.08996 * 109.22845 * 160.12821 * 6 5 4 29 29 H 1.09007 * 109.22913 * 279.53039 * 6 5 4 30 30 H 0.97005 * 120.00007 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9746 1.3174 0.0000 4 6 3.4815 1.4207 0.2025 5 6 4.1822 1.2777 -1.1292 6 6 4.5535 -0.2002 -1.3628 7 6 3.4388 -1.1148 -0.8900 8 8 3.7263 -2.1283 -0.2995 9 6 2.0013 -0.8042 -1.1300 10 1 1.9028 -0.2382 -2.0563 11 6 1.2222 -2.0893 -1.2420 12 1 1.2681 -2.8196 -0.4476 13 6 0.4509 -2.3328 -2.3585 14 7 -0.2247 -3.4567 -2.4587 15 14 0.3710 -1.0694 -3.7322 16 1 1.4452 -1.3437 -4.7201 17 1 -0.9512 -1.1508 -4.4032 18 1 0.5555 0.2907 -3.1652 19 1 -0.3634 -1.0073 0.2035 20 1 -0.3634 0.6799 0.7707 21 1 -0.3634 0.3275 -0.9740 22 1 1.7219 1.7836 -0.9523 23 1 1.4829 1.8755 0.7968 24 1 3.7236 2.3902 0.6379 25 1 3.8127 0.6286 0.8740 26 1 3.5197 1.6156 -1.9260 27 1 5.0884 1.8834 -1.1293 28 1 4.7249 -0.3634 -2.4268 29 1 5.4655 -0.4325 -0.8127 30 1 -0.7677 -3.6278 -3.2441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259602934.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = -30.907067 kcal Electronic energy + Delta-G solvation = -13381.250212 eV Core-core repulsion = 11176.727491 eV Total energy + Delta-G solvation = -2204.522721 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.37375 -36.67886 -34.17580 -32.48031 -29.89389 -27.69273 -25.69567 -23.11520 -22.37317 -20.05885 -17.99533 -17.27229 -15.44926 -15.37788 -14.56595 -14.53181 -14.05404 -13.47894 -13.01445 -12.79053 -12.44488 -12.16512 -11.91787 -11.21077 -11.17361 -10.99844 -10.75156 -10.50148 -10.32419 -10.17873 -9.92323 -9.36324 -8.83925 -8.41625 -7.25960 -6.21141 -4.21590 2.97040 3.15170 3.19520 3.23576 4.24340 4.70505 4.88436 5.10189 5.17579 5.36280 5.60509 5.65840 5.82086 5.93087 6.15857 6.18489 6.23487 6.30145 6.31285 6.34716 6.53192 6.58811 6.83711 7.08407 7.36100 7.91128 8.15732 8.44219 8.72675 8.98065 9.38527 10.91060 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035645 B = 0.016123 C = 0.015075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.345468 B = 1736.218178 C = 1856.920320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.540 5.540 3 C 0.061 3.939 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.177 4.177 7 C 0.372 3.628 8 O -0.451 6.451 9 C 0.139 3.861 10 H 0.031 0.969 11 C -0.493 4.493 12 H 0.090 0.910 13 C 0.077 3.923 14 N -0.884 5.884 15 Si 0.865 3.135 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.265 1.265 19 H 0.086 0.914 20 H 0.043 0.957 21 H 0.015 0.985 22 H 0.011 0.989 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 11.123 0.709 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.267 5.267 3 C -0.069 4.069 4 C -0.162 4.162 5 C -0.150 4.150 6 C -0.215 4.215 7 C 0.245 3.755 8 O -0.322 6.322 9 C 0.034 3.966 10 H 0.049 0.951 11 C -0.532 4.532 12 H 0.108 0.892 13 C -0.127 4.127 14 N -0.521 5.521 15 Si 0.692 3.308 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.190 1.190 19 H 0.104 0.896 20 H 0.062 0.938 21 H 0.033 0.967 22 H 0.029 0.971 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.062 10.237 1.325 11.497 hybrid contribution -0.348 1.125 -1.739 2.100 sum 4.714 11.363 -0.413 12.309 Atomic orbital electron populations 1.22017 0.86415 1.02887 0.97933 1.60399 1.08329 1.11258 1.46710 1.20929 0.95058 0.91712 0.99177 1.21296 0.95478 1.01946 0.97481 1.21452 1.00471 0.94974 0.98117 1.22752 0.99596 0.96122 1.03050 1.24741 0.92165 0.84206 0.74377 1.90256 1.85835 1.25199 1.30889 1.20188 0.91363 0.95594 0.89434 0.95112 1.20734 1.25842 1.00771 1.05855 0.89239 1.25099 0.94807 0.95158 0.97644 1.69871 1.29295 1.23727 1.29174 0.87064 0.78223 0.82574 0.82957 1.19898 1.20794 1.18979 0.89551 0.93842 0.96656 0.97112 0.92340 0.91533 0.90863 0.91724 0.91632 0.89663 0.90181 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.13 8.90 60.07 0.53 1.67 16 2 N -0.54 -11.67 4.64 -242.33 -1.13 -12.80 16 3 C 0.06 1.07 4.75 -7.16 -0.03 1.04 16 4 C -0.12 -1.89 5.51 -27.97 -0.15 -2.04 16 5 C -0.11 -1.63 5.77 -27.05 -0.16 -1.78 16 6 C -0.18 -3.01 6.08 -26.76 -0.16 -3.18 16 7 C 0.37 8.46 5.13 -29.32 -0.15 8.31 16 8 O -0.45 -11.80 16.84 6.00 0.10 -11.70 16 9 C 0.14 3.33 1.68 -69.90 -0.12 3.22 16 10 H 0.03 0.74 4.36 -51.93 -0.23 0.51 16 11 C -0.49 -13.91 6.49 -34.44 -0.22 -14.13 16 12 H 0.09 2.88 7.94 -52.49 -0.42 2.46 16 13 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 14 N -0.88 -26.36 13.96 55.43 0.77 -25.59 16 15 Si 0.86 20.62 26.69 -169.99 -4.54 16.08 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.26 -6.00 6.26 56.52 0.35 -5.65 16 19 H 0.09 1.99 7.06 -51.93 -0.37 1.63 16 20 H 0.04 0.75 7.81 -51.92 -0.41 0.34 16 21 H 0.01 0.32 7.45 -51.93 -0.39 -0.07 16 22 H 0.01 0.19 7.27 -51.93 -0.38 -0.18 16 23 H 0.06 0.92 7.78 -51.93 -0.40 0.51 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.25 7.23 -51.93 -0.38 0.87 16 26 H 0.06 0.95 7.32 -51.93 -0.38 0.57 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 237.45 15.07 3.58 3.58 Total: -1.00 -30.99 237.45 -5.98 -36.97 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.21 Total: -1.71 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.56 Total: -4.83 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.35 Total: -38.39 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.10 Total: -11.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.54 Total: 16.08 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.99 -5.98 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602934.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.059 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds