Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.41106 * 110.99677 * 2 1 4 4 C 1.52389 * 114.68447 * 171.59244 * 3 2 1 5 5 C 1.51153 * 109.56765 * 85.83958 * 4 3 2 6 6 C 1.54164 * 109.62739 * 267.38063 * 5 4 3 7 7 C 1.51746 * 110.70824 * 39.80974 * 6 5 4 8 8 O 1.20764 * 118.89899 * 221.12480 * 7 6 5 9 9 C 1.48556 * 110.99602 * 234.56110 * 2 1 3 10 10 H 1.09003 * 109.44616 * 76.22002 * 9 2 1 11 11 C 1.50700 * 109.44690 * 316.28195 * 9 2 1 12 12 H 1.08001 * 119.99710 * 294.96341 * 11 9 2 13 13 C 1.37877 * 120.00224 * 114.96599 * 11 9 2 14 14 N 1.31506 * 120.00046 * 179.72380 * 13 11 9 15 15 Si 1.86804 * 119.99722 * 359.97438 * 13 11 9 16 16 H 1.48497 * 109.46852 * 90.00224 * 15 13 11 17 17 H 1.48499 * 109.46905 * 210.00202 * 15 13 11 18 18 H 1.48503 * 109.47171 * 330.00368 * 15 13 11 19 19 H 1.09003 * 109.47373 * 191.42176 * 1 2 3 20 20 H 1.09009 * 109.47232 * 311.41738 * 1 2 3 21 21 H 1.08996 * 109.47661 * 71.41636 * 1 2 3 22 22 H 1.09003 * 108.43873 * 292.93635 * 3 2 1 23 23 H 1.09000 * 108.44535 * 50.40528 * 3 2 1 24 24 H 1.09005 * 109.45500 * 205.87174 * 4 3 2 25 25 H 1.09007 * 109.45393 * 325.80608 * 4 3 2 26 26 H 1.08994 * 109.44567 * 27.42646 * 5 4 3 27 27 H 1.09000 * 109.44191 * 147.36886 * 5 4 3 28 28 H 1.08996 * 109.22845 * 160.12821 * 6 5 4 29 29 H 1.09007 * 109.22913 * 279.53039 * 6 5 4 30 30 H 0.97005 * 120.00007 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9746 1.3174 0.0000 4 6 3.4815 1.4207 0.2025 5 6 4.1822 1.2777 -1.1292 6 6 4.5535 -0.2002 -1.3628 7 6 3.4388 -1.1148 -0.8900 8 8 3.7263 -2.1283 -0.2995 9 6 2.0013 -0.8042 -1.1300 10 1 1.9028 -0.2382 -2.0563 11 6 1.2222 -2.0893 -1.2420 12 1 1.2681 -2.8196 -0.4476 13 6 0.4509 -2.3328 -2.3585 14 7 -0.2247 -3.4567 -2.4587 15 14 0.3710 -1.0694 -3.7322 16 1 1.4452 -1.3437 -4.7201 17 1 -0.9512 -1.1508 -4.4032 18 1 0.5555 0.2907 -3.1652 19 1 -0.3634 -1.0073 0.2035 20 1 -0.3634 0.6799 0.7707 21 1 -0.3634 0.3275 -0.9740 22 1 1.7219 1.7836 -0.9523 23 1 1.4829 1.8755 0.7968 24 1 3.7236 2.3902 0.6379 25 1 3.8127 0.6286 0.8740 26 1 3.5197 1.6156 -1.9260 27 1 5.0884 1.8834 -1.1293 28 1 4.7249 -0.3634 -2.4268 29 1 5.4655 -0.4325 -0.8127 30 1 -0.7677 -3.6278 -3.2441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259602934.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = -54.264380 kcal Electronic energy + Delta-G solvation = -13382.263061 eV Core-core repulsion = 11176.727491 eV Total energy + Delta-G solvation = -2205.535570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.05926 -38.40062 -35.68266 -34.46296 -31.62192 -29.33522 -27.40865 -24.75676 -24.00223 -21.44213 -19.72401 -19.33548 -17.14640 -16.99392 -16.27690 -16.15652 -15.67421 -15.08775 -14.81173 -14.37325 -13.98908 -13.86056 -13.55570 -13.01304 -12.85274 -12.60549 -12.26853 -11.93218 -11.82135 -11.74293 -11.44946 -11.31512 -10.93048 -10.23236 -8.92838 -8.37576 -6.44784 1.19137 1.25070 1.30857 1.36635 2.22887 2.89730 3.16801 3.65612 4.01389 4.04351 4.17911 4.24830 4.41403 4.52992 4.65817 4.70689 4.79806 4.94962 5.00580 5.13958 5.20659 5.21542 5.30646 5.36672 5.50698 6.08270 6.26038 6.62714 6.75110 6.96424 7.19113 8.79703 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035645 B = 0.016123 C = 0.015075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.345468 B = 1736.218178 C = 1856.920320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.556 5.556 3 C 0.051 3.949 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.169 4.169 7 C 0.366 3.634 8 O -0.503 6.503 9 C 0.138 3.862 10 H 0.043 0.957 11 C -0.501 4.501 12 H 0.024 0.976 13 C 0.020 3.980 14 N -0.938 5.938 15 Si 0.934 3.066 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.239 1.239 19 H 0.045 0.955 20 H 0.081 0.919 21 H 0.013 0.987 22 H 0.020 0.980 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 14.988 -0.371 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.283 5.283 3 C -0.078 4.078 4 C -0.161 4.161 5 C -0.146 4.146 6 C -0.207 4.207 7 C 0.242 3.758 8 O -0.377 6.377 9 C 0.032 3.968 10 H 0.060 0.940 11 C -0.540 4.540 12 H 0.042 0.958 13 C -0.179 4.179 14 N -0.577 5.577 15 Si 0.757 3.243 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.163 1.163 19 H 0.064 0.936 20 H 0.100 0.900 21 H 0.031 0.969 22 H 0.038 0.962 23 H 0.099 0.901 24 H 0.125 0.875 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.401 14.136 0.258 15.520 hybrid contribution -0.781 -0.123 -1.269 1.495 sum 5.620 14.013 -1.011 15.132 Atomic orbital electron populations 1.21957 0.86351 1.01449 0.99056 1.60245 1.08660 1.13845 1.45522 1.21166 0.97060 0.89135 1.00482 1.21355 0.93598 1.03278 0.97843 1.21534 1.02446 0.93043 0.97588 1.22733 0.97263 0.96613 1.04099 1.25393 0.93287 0.84106 0.73014 1.90244 1.86470 1.27598 1.33409 1.20131 0.92008 0.93814 0.90827 0.94005 1.20708 1.27127 1.01730 1.04409 0.95762 1.26005 0.94004 0.97450 1.00481 1.70041 1.30762 1.26406 1.30448 0.85950 0.78748 0.80470 0.79148 1.18471 1.20292 1.16286 0.93593 0.90026 0.96876 0.96228 0.90061 0.87532 0.93257 0.91230 0.87438 0.87603 0.88781 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.43 8.90 127.69 1.14 3.56 16 2 N -0.56 -23.45 4.64 -920.59 -4.27 -27.72 16 3 C 0.05 1.58 4.75 87.16 0.41 2.00 16 4 C -0.12 -3.19 5.51 29.79 0.16 -3.02 16 5 C -0.11 -2.56 5.77 30.39 0.18 -2.38 16 6 C -0.17 -5.19 6.08 30.58 0.19 -5.00 16 7 C 0.37 16.47 5.13 28.92 0.15 16.62 16 8 O -0.50 -27.26 16.84 -1.46 -0.02 -27.28 16 9 C 0.14 6.57 1.68 42.58 0.07 6.64 16 10 H 0.04 1.89 4.36 -2.39 -0.01 1.88 16 11 C -0.50 -29.63 6.49 25.60 0.17 -29.46 16 12 H 0.02 1.69 7.94 -2.91 -0.02 1.67 16 13 C 0.02 1.15 5.47 84.66 0.46 1.61 16 14 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 15 Si 0.93 42.06 26.69 68.60 1.83 43.89 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.24 -9.69 6.26 99.48 0.62 -9.06 16 19 H 0.05 2.21 7.06 -2.39 -0.02 2.20 16 20 H 0.08 2.66 7.81 -2.38 -0.02 2.64 16 21 H 0.01 0.52 7.45 -2.39 -0.02 0.50 16 22 H 0.02 0.60 7.27 -2.39 -0.02 0.58 16 23 H 0.08 2.18 7.78 -2.39 -0.02 2.17 16 24 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.05 1.54 7.23 -2.38 -0.02 1.52 16 26 H 0.07 1.62 7.32 -2.39 -0.02 1.60 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.09 2.64 8.13 -2.38 -0.02 2.62 16 30 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -72.94 237.45 1.79 -71.15 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.03 Total: 7.71 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 2.93 Total: -9.44 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.98 Total: -86.04 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.02 Total: -27.28 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.83 Total: 43.89 kcal Total: -72.94 1.79 -71.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602934.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.888 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds