Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48840 * 111.00102 * 2 1 4 4 C 1.50181 * 110.59943 * 196.57441 * 3 2 1 5 5 C 1.52343 * 105.28741 * 98.95581 * 4 3 2 6 6 C 1.46617 * 114.45404 * 269.44597 * 5 4 3 7 7 C 1.54721 * 106.42362 * 58.01439 * 6 5 4 8 8 O 1.20763 * 120.74390 * 113.44869 * 7 6 5 9 9 C 1.47914 * 118.51294 * 293.72780 * 7 6 5 10 10 H 1.09003 * 107.96821 * 327.02357 * 9 7 6 11 11 C 1.50707 * 107.96513 * 210.76718 * 9 7 6 12 12 H 1.07998 * 119.99725 * 245.31489 * 11 9 7 13 13 C 1.37870 * 119.99930 * 65.31488 * 11 9 7 14 14 N 1.31518 * 120.00346 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00041 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47114 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47187 * 120.00042 * 15 13 11 18 18 H 1.48505 * 109.47369 * 240.00068 * 15 13 11 19 19 H 1.08997 * 109.46980 * 74.63722 * 1 2 3 20 20 H 1.08998 * 109.47301 * 194.63488 * 1 2 3 21 21 H 1.08998 * 109.47333 * 314.63840 * 1 2 3 22 22 H 1.09001 * 109.25304 * 76.28524 * 3 2 1 23 23 H 1.09006 * 109.21813 * 316.83730 * 3 2 1 24 24 H 1.09004 * 110.27783 * 340.01896 * 4 3 2 25 25 H 1.08994 * 110.27487 * 217.89692 * 4 3 2 26 26 H 1.08995 * 108.48987 * 148.15629 * 5 4 3 27 27 H 1.09001 * 108.48789 * 30.72908 * 5 4 3 28 28 H 1.09003 * 110.05629 * 298.78956 * 6 5 4 29 29 H 1.08999 * 110.06025 * 177.24681 * 6 5 4 30 30 H 0.97000 * 120.00447 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3895 0.0000 4 6 3.4496 1.3999 -0.4010 5 6 3.4549 1.7787 -1.8766 6 6 3.3873 0.6387 -2.7961 7 6 2.0906 -0.1294 -2.4460 8 8 1.1717 -0.1782 -3.2280 9 6 1.9993 -0.7974 -1.1294 10 1 2.9971 -1.1414 -0.8569 11 6 1.1205 -2.0120 -1.2844 12 1 0.1719 -2.0611 -0.7706 13 6 1.5277 -3.0602 -2.0820 14 7 2.6832 -3.0005 -2.7073 15 14 0.4383 -4.5653 -2.2747 16 1 -0.7996 -4.3860 -1.4743 17 1 0.0812 -4.7380 -3.7057 18 1 1.1669 -5.7682 -1.7977 19 1 -0.3633 0.2723 -0.9909 20 1 -0.3634 -0.9943 0.2596 21 1 -0.3634 0.7220 0.7312 22 1 1.9034 1.8125 0.9997 23 1 1.4301 1.9936 -0.7041 24 1 3.8869 0.4110 -0.2635 25 1 3.9975 2.1409 0.1810 26 1 4.3662 2.3385 -2.0866 27 1 2.6018 2.4293 -2.0695 28 1 4.2540 -0.0072 -2.6551 29 1 3.3462 0.9914 -3.8266 30 1 2.9696 -3.7378 -3.2688 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259602935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = -23.627323 kcal Electronic energy + Delta-G solvation = -13445.484088 eV Core-core repulsion = 11241.277040 eV Total energy + Delta-G solvation = -2204.207048 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.26248 -36.14526 -34.22357 -32.42072 -29.55246 -27.41256 -25.46865 -23.01173 -22.31316 -19.93361 -18.07862 -16.50454 -15.67851 -14.75143 -14.55882 -14.22512 -13.92059 -13.12210 -12.87223 -12.66870 -12.50845 -11.87580 -11.56729 -11.23116 -10.94553 -10.74781 -10.57002 -10.46590 -10.27352 -10.13275 -9.71555 -9.10128 -8.55236 -8.43158 -7.12034 -6.12937 -4.12650 3.29089 3.37950 3.41918 3.42654 4.39749 4.87289 5.02627 5.28593 5.32434 5.54682 5.65757 5.93930 5.98559 6.16415 6.19808 6.32370 6.40539 6.49728 6.56246 6.59014 6.74749 6.77787 6.95883 7.25993 7.70042 7.90120 8.08207 8.33293 8.87868 9.04419 9.52784 10.98829 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043475 B = 0.014785 C = 0.012689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.900863 B = 1893.386867 C = 2206.046427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.511 5.511 3 C 0.040 3.960 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.172 4.172 7 C 0.374 3.626 8 O -0.466 6.466 9 C 0.154 3.846 10 H 0.068 0.932 11 C -0.510 4.510 12 H 0.075 0.925 13 C 0.062 3.938 14 N -0.897 5.897 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.283 1.283 19 H 0.026 0.974 20 H 0.079 0.921 21 H 0.041 0.959 22 H 0.064 0.936 23 H 0.028 0.972 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 7.194 3.610 8.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.237 5.237 3 C -0.088 4.088 4 C -0.164 4.164 5 C -0.151 4.151 6 C -0.211 4.211 7 C 0.246 3.754 8 O -0.337 6.337 9 C 0.046 3.954 10 H 0.085 0.915 11 C -0.548 4.548 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.209 1.209 19 H 0.044 0.956 20 H 0.097 0.903 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.046 0.954 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.332 6.837 3.490 7.791 hybrid contribution -0.551 -0.478 -1.094 1.315 sum 0.782 6.359 2.396 6.841 Atomic orbital electron populations 1.22336 0.88581 1.01792 0.98904 1.63552 1.07638 1.10453 1.42024 1.22334 0.95128 0.91239 1.00059 1.21222 0.96781 1.03345 0.95092 1.20379 1.01568 0.97836 0.95320 1.21787 1.01371 0.98452 0.99461 1.25848 0.85513 0.73405 0.90595 1.90170 1.41148 1.50518 1.51826 1.19594 0.99714 0.91748 0.84295 0.91477 1.21324 1.04989 0.99787 1.28652 0.90681 1.24970 0.95162 0.98816 0.95051 1.69868 1.20177 1.32759 1.30700 0.86334 0.80526 0.82082 0.77877 1.19606 1.21071 1.20948 0.95562 0.90261 0.94017 0.91784 0.95378 0.89206 0.91336 0.92586 0.92819 0.89192 0.91282 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.54 60.06 0.51 1.17 16 2 N -0.51 -11.00 5.10 -238.36 -1.22 -12.21 16 3 C 0.04 0.71 5.23 -4.15 -0.02 0.69 16 4 C -0.13 -2.04 5.78 -28.47 -0.16 -2.20 16 5 C -0.11 -1.86 5.05 -30.11 -0.15 -2.01 16 6 C -0.17 -3.45 6.06 -28.87 -0.17 -3.62 16 7 C 0.37 9.32 4.77 -28.29 -0.13 9.19 16 8 O -0.47 -13.17 17.02 6.00 0.10 -13.07 16 9 C 0.15 3.84 1.39 -70.68 -0.10 3.74 16 10 H 0.07 1.78 6.73 -51.93 -0.35 1.43 16 11 C -0.51 -14.13 7.29 -34.44 -0.25 -14.38 16 12 H 0.08 2.05 5.08 -52.49 -0.27 1.78 16 13 C 0.06 1.76 5.25 -17.82 -0.09 1.67 16 14 N -0.90 -25.90 12.53 55.43 0.69 -25.20 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 20 H 0.08 1.68 6.05 -51.93 -0.31 1.37 16 21 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.03 0.51 6.63 -51.93 -0.34 0.16 16 24 H 0.09 1.61 6.20 -51.93 -0.32 1.29 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.88 6.88 -51.93 -0.36 0.53 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 237.53 15.07 3.58 3.58 Total: -1.00 -30.61 237.53 -6.48 -37.09 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.04 Total: -1.48 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.58 Total: -5.76 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.52 Total: -37.42 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.10 Total: -13.07 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.61 -6.48 -37.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.459 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds