Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48840 * 111.00102 * 2 1 4 4 C 1.50181 * 110.59943 * 196.57441 * 3 2 1 5 5 C 1.52343 * 105.28741 * 98.95581 * 4 3 2 6 6 C 1.46617 * 114.45404 * 269.44597 * 5 4 3 7 7 C 1.54721 * 106.42362 * 58.01439 * 6 5 4 8 8 O 1.20763 * 120.74390 * 113.44869 * 7 6 5 9 9 C 1.47914 * 118.51294 * 293.72780 * 7 6 5 10 10 H 1.09003 * 107.96821 * 327.02357 * 9 7 6 11 11 C 1.50707 * 107.96513 * 210.76718 * 9 7 6 12 12 H 1.07998 * 119.99725 * 245.31489 * 11 9 7 13 13 C 1.37870 * 119.99930 * 65.31488 * 11 9 7 14 14 N 1.31518 * 120.00346 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00041 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47114 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47187 * 120.00042 * 15 13 11 18 18 H 1.48505 * 109.47369 * 240.00068 * 15 13 11 19 19 H 1.08997 * 109.46980 * 74.63722 * 1 2 3 20 20 H 1.08998 * 109.47301 * 194.63488 * 1 2 3 21 21 H 1.08998 * 109.47333 * 314.63840 * 1 2 3 22 22 H 1.09001 * 109.25304 * 76.28524 * 3 2 1 23 23 H 1.09006 * 109.21813 * 316.83730 * 3 2 1 24 24 H 1.09004 * 110.27783 * 340.01896 * 4 3 2 25 25 H 1.08994 * 110.27487 * 217.89692 * 4 3 2 26 26 H 1.08995 * 108.48987 * 148.15629 * 5 4 3 27 27 H 1.09001 * 108.48789 * 30.72908 * 5 4 3 28 28 H 1.09003 * 110.05629 * 298.78956 * 6 5 4 29 29 H 1.08999 * 110.06025 * 177.24681 * 6 5 4 30 30 H 0.97000 * 120.00447 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3895 0.0000 4 6 3.4496 1.3999 -0.4010 5 6 3.4549 1.7787 -1.8766 6 6 3.3873 0.6387 -2.7961 7 6 2.0906 -0.1294 -2.4460 8 8 1.1717 -0.1782 -3.2280 9 6 1.9993 -0.7974 -1.1294 10 1 2.9971 -1.1414 -0.8569 11 6 1.1205 -2.0120 -1.2844 12 1 0.1719 -2.0611 -0.7706 13 6 1.5277 -3.0602 -2.0820 14 7 2.6832 -3.0005 -2.7073 15 14 0.4383 -4.5653 -2.2747 16 1 -0.7996 -4.3860 -1.4743 17 1 0.0812 -4.7380 -3.7057 18 1 1.1669 -5.7682 -1.7977 19 1 -0.3633 0.2723 -0.9909 20 1 -0.3634 -0.9943 0.2596 21 1 -0.3634 0.7220 0.7312 22 1 1.9034 1.8125 0.9997 23 1 1.4301 1.9936 -0.7041 24 1 3.8869 0.4110 -0.2635 25 1 3.9975 2.1409 0.1810 26 1 4.3662 2.3385 -2.0866 27 1 2.6018 2.4293 -2.0695 28 1 4.2540 -0.0072 -2.6551 29 1 3.3462 0.9914 -3.8266 30 1 2.9696 -3.7378 -3.2688 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259602935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = -45.401145 kcal Electronic energy + Delta-G solvation = -13446.428272 eV Core-core repulsion = 11241.277040 eV Total energy + Delta-G solvation = -2205.151232 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.03581 -37.94699 -35.86678 -34.42145 -31.24810 -29.19422 -27.29094 -24.73239 -23.99647 -21.38546 -19.97715 -18.49136 -17.38410 -16.62579 -16.31849 -15.97116 -15.65586 -14.81089 -14.50824 -14.41908 -14.19640 -13.71691 -13.32573 -12.88410 -12.80550 -12.65493 -12.23048 -11.96082 -11.87287 -11.71895 -11.37457 -11.06686 -10.65728 -10.27061 -8.88194 -8.26238 -6.30412 1.33782 1.37673 1.48396 1.49887 2.37426 3.06520 3.27245 3.55574 3.89226 4.17383 4.18229 4.43969 4.51550 4.61763 4.77800 4.78411 4.93364 5.05618 5.07487 5.11778 5.19929 5.26718 5.38491 5.43365 5.67363 5.95502 6.25304 6.52773 6.77113 7.11095 7.37775 8.85040 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043475 B = 0.014785 C = 0.012689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.900863 B = 1893.386867 C = 2206.046427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.520 5.520 3 C 0.036 3.964 4 C -0.123 4.123 5 C -0.113 4.113 6 C -0.162 4.162 7 C 0.366 3.634 8 O -0.511 6.511 9 C 0.158 3.842 10 H 0.047 0.953 11 C -0.527 4.527 12 H 0.072 0.928 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.959 3.041 16 H -0.265 1.265 17 H -0.290 1.290 18 H -0.272 1.272 19 H 0.000 1.000 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 8.454 4.616 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.246 5.246 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.200 4.200 7 C 0.242 3.758 8 O -0.386 6.386 9 C 0.050 3.950 10 H 0.065 0.935 11 C -0.565 4.565 12 H 0.090 0.910 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.785 3.215 16 H -0.189 1.189 17 H -0.216 1.216 18 H -0.197 1.197 19 H 0.019 0.981 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.113 0.887 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.130 0.870 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.813 8.109 4.526 9.462 hybrid contribution -0.693 -0.821 -1.352 1.727 sum 1.119 7.288 3.174 8.027 Atomic orbital electron populations 1.22278 0.88189 1.02042 0.98537 1.63500 1.08042 1.12929 1.40142 1.22553 0.95957 0.88679 1.01917 1.21264 0.95944 1.03499 0.95362 1.20391 1.03611 0.96323 0.94740 1.21760 0.98163 0.99162 1.00963 1.26373 0.86709 0.72745 0.89999 1.90143 1.43191 1.52488 1.52768 1.19429 0.98147 0.91909 0.85525 0.93492 1.21728 1.05297 1.01144 1.28295 0.91041 1.25741 0.96445 1.01584 0.95059 1.69954 1.21406 1.33494 1.31421 0.85474 0.79312 0.79335 0.77405 1.18872 1.21603 1.19720 0.98093 0.91770 0.90087 0.88690 0.95607 0.91368 0.87033 0.88689 0.92675 0.89285 0.90744 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 8.54 127.69 1.09 2.62 16 2 N -0.52 -21.91 5.10 -908.03 -4.63 -26.55 16 3 C 0.04 1.16 5.23 85.02 0.44 1.61 16 4 C -0.12 -3.56 5.78 29.47 0.17 -3.39 16 5 C -0.11 -3.37 5.05 28.40 0.14 -3.23 16 6 C -0.16 -6.32 6.06 29.21 0.18 -6.14 16 7 C 0.37 18.39 4.77 29.58 0.14 18.53 16 8 O -0.51 -29.58 17.02 -1.46 -0.02 -29.61 16 9 C 0.16 7.95 1.39 42.35 0.06 8.01 16 10 H 0.05 2.55 6.73 -2.39 -0.02 2.53 16 11 C -0.53 -29.73 7.29 25.60 0.19 -29.55 16 12 H 0.07 3.98 5.08 -2.91 -0.01 3.97 16 13 C 0.01 0.62 5.25 84.65 0.44 1.06 16 14 N -0.92 -54.28 12.53 21.45 0.27 -54.01 16 15 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 16 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 H 0.00 0.02 8.05 -2.39 -0.02 0.00 16 20 H 0.06 2.74 6.05 -2.39 -0.01 2.72 16 21 H 0.08 2.59 8.02 -2.39 -0.02 2.57 16 22 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.03 0.86 6.63 -2.38 -0.02 0.84 16 24 H 0.07 2.32 6.20 -2.39 -0.01 2.30 16 25 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.65 6.88 -2.39 -0.02 1.64 16 28 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -67.09 237.53 1.62 -65.47 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.12 Total: 7.33 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 2.86 Total: -10.48 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -4.36 Total: -80.56 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.02 Total: -29.61 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -67.09 1.62 -65.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.071 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds