Wall clock time and date at job start Mon Mar 30 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46914 * 2 1 4 4 H 1.09007 * 109.13121 * 304.48330 * 3 2 1 5 5 N 1.45756 * 109.30042 * 63.96332 * 3 2 1 6 6 C 1.33353 * 124.10121 * 139.38895 * 5 3 2 7 7 O 1.21287 * 118.24326 * 177.75450 * 6 5 3 8 8 C 1.50179 * 123.51171 * 357.77376 * 6 5 3 9 9 C 1.53070 * 109.88987 * 17.58698 * 8 6 5 10 10 C 1.52923 * 109.30193 * 185.00378 * 3 2 1 11 11 H 1.09001 * 109.73305 * 308.77065 * 10 3 2 12 12 C 1.50696 * 109.60245 * 69.17276 * 10 3 2 13 13 H 1.07999 * 120.00319 * 359.19387 * 12 10 3 14 14 C 1.37885 * 119.99717 * 179.18770 * 12 10 3 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 H 1.08997 * 109.47305 * 60.00441 * 1 2 3 21 21 H 1.09002 * 109.46847 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47034 * 299.99975 * 1 2 3 23 23 H 1.08999 * 109.47034 * 240.00025 * 2 1 3 24 24 H 1.08997 * 109.47164 * 120.00333 * 2 1 3 25 25 H 0.96991 * 117.94551 * 319.38724 * 5 3 2 26 26 H 1.08998 * 109.40036 * 257.45259 * 8 6 5 27 27 H 1.09001 * 109.32955 * 137.67339 * 8 6 5 28 28 H 1.09000 * 109.67093 * 191.36337 * 9 8 6 29 29 H 1.08998 * 109.67340 * 70.83125 * 9 8 6 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6093 1.9736 -0.8489 5 7 1.6312 2.0979 1.2360 6 6 2.4088 2.9243 1.9366 7 8 1.9458 3.4443 2.9297 8 6 3.8270 3.2459 1.5615 9 6 4.0778 2.8669 0.0998 10 6 3.5640 1.4399 -0.1259 11 1 3.9939 0.7737 0.6222 12 6 3.9567 0.9730 -1.5039 13 1 3.1952 0.6918 -2.2162 14 6 5.2883 0.9050 -1.8553 15 7 5.6310 0.4981 -3.0580 16 14 6.6053 1.3909 -0.6230 17 1 6.8999 2.8400 -0.7587 18 1 6.1232 1.1105 0.7533 19 1 7.8401 0.6082 -0.8839 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.7377 1.9221 1.5698 26 1 4.5071 2.6853 2.2028 27 1 4.0020 4.3135 1.6939 28 1 5.1460 2.9102 -0.1124 29 1 3.5449 3.5566 -0.5547 30 1 6.5677 0.4506 -3.3053 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259622510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:16 Heat of formation + Delta-G solvation = -75.504297 kcal Electronic energy + Delta-G solvation = -13084.501260 eV Core-core repulsion = 10878.044658 eV Total energy + Delta-G solvation = -2206.456602 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35970 -38.31414 -35.38259 -34.15625 -32.89353 -30.50859 -26.78983 -25.26853 -23.01379 -22.31283 -20.00572 -19.19483 -17.95823 -16.92665 -16.48879 -16.25158 -15.31151 -15.10150 -14.79182 -14.56900 -14.29761 -13.85445 -13.37954 -13.03633 -12.60955 -12.51513 -12.21751 -11.80432 -11.70534 -11.67117 -11.43417 -11.06564 -10.80828 -10.49575 -9.98915 -8.25843 -6.29703 1.33977 1.40900 1.49013 1.62942 2.35161 2.42447 3.08646 3.67739 3.91626 4.01661 4.09513 4.31487 4.34261 4.50374 4.66660 4.77722 4.83904 4.96003 5.03354 5.12077 5.26070 5.37043 5.48912 5.60654 5.63631 5.90054 6.23569 6.45625 6.77501 7.23849 7.35966 8.89548 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033024 B = 0.015526 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.660880 B = 1803.021291 C = 2495.581677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.070 0.930 5 N -0.700 5.700 6 C 0.523 3.477 7 O -0.609 6.609 8 C -0.135 4.135 9 C -0.127 4.127 10 C 0.005 3.995 11 H 0.033 0.967 12 C -0.504 4.504 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.945 5.945 16 Si 0.935 3.065 17 H -0.264 1.264 18 H -0.244 1.244 19 H -0.305 1.305 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.400 0.600 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 1.543 6.909 8.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.054 3.946 4 H 0.088 0.912 5 N -0.350 5.350 6 C 0.312 3.688 7 O -0.493 6.493 8 C -0.175 4.175 9 C -0.165 4.165 10 C -0.014 4.014 11 H 0.051 0.949 12 C -0.543 4.543 13 H 0.068 0.932 14 C -0.180 4.180 15 N -0.585 5.585 16 Si 0.763 3.237 17 H -0.190 1.190 18 H -0.168 1.168 19 H -0.233 1.233 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.237 0.763 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.350 1.800 7.192 9.143 hybrid contribution 0.645 -0.079 -0.023 0.650 sum -4.706 1.721 7.169 8.746 Atomic orbital electron populations 1.21790 0.94165 1.02641 1.01918 1.21778 0.96859 0.94930 1.02813 1.20939 0.95549 0.93610 0.84494 0.91177 1.45708 1.17710 1.45739 1.25883 1.20377 0.89038 0.77527 0.81886 1.90672 1.75384 1.54167 1.29058 1.21716 0.92705 1.04635 0.98435 1.22060 1.00917 0.99203 0.94292 1.19434 0.92293 0.93184 0.96490 0.94886 1.21048 0.92491 1.43244 0.97495 0.93203 1.25738 1.00930 0.94846 0.96440 1.70017 1.18022 1.49216 1.21214 0.86046 0.78221 0.78195 0.81246 1.19039 1.16801 1.23274 0.92411 0.91372 0.92162 0.91155 0.91929 0.76296 0.88010 0.87126 0.92928 0.91195 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.75 71.98 0.70 -2.77 16 2 C -0.13 -3.87 5.51 30.59 0.17 -3.70 16 3 C 0.16 5.41 2.48 45.10 0.11 5.52 16 4 H 0.07 2.47 8.11 -2.38 -0.02 2.45 16 5 N -0.70 -22.18 5.12 -446.62 -2.29 -24.47 16 6 C 0.52 18.43 7.71 87.71 0.68 19.11 16 7 O -0.61 -24.60 17.78 -3.05 -0.05 -24.65 16 8 C -0.14 -4.44 6.03 29.71 0.18 -4.26 16 9 C -0.13 -4.79 4.80 30.73 0.15 -4.65 16 10 C 0.01 0.22 1.18 -11.45 -0.01 0.20 16 11 H 0.03 1.39 7.19 -2.39 -0.02 1.38 16 12 C -0.50 -25.58 8.41 25.60 0.22 -25.37 16 13 H 0.05 2.77 7.59 -2.91 -0.02 2.74 16 14 C 0.02 0.98 5.45 84.66 0.46 1.44 16 15 N -0.94 -55.57 13.96 21.45 0.30 -55.27 16 16 Si 0.94 41.62 24.43 68.60 1.68 43.29 16 17 H -0.26 -11.17 6.81 99.48 0.68 -10.50 16 18 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 19 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.24 6.63 -2.39 -0.02 1.23 16 23 H 0.07 2.50 7.11 -2.39 -0.02 2.48 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.40 11.12 6.98 -92.71 -0.65 10.47 16 26 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.05 2.09 3.26 -2.39 -0.01 2.08 16 29 H 0.07 2.58 8.13 -2.39 -0.02 2.56 16 30 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -60.99 237.08 2.68 -58.30 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.40 Total: 17.26 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 2.65 Total: -14.47 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.99 Total: -79.74 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.68 Total: 43.29 kcal Total: -60.99 2.68 -58.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.202 kcal (2) G-P(sol) polarization free energy of solvation -60.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds