Wall clock time and date at job start Mon Mar 30 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46522 * 2 1 4 4 C 1.50704 * 109.47170 * 240.00251 * 2 1 3 5 5 H 1.07994 * 119.99925 * 239.99772 * 4 2 1 6 6 C 1.37882 * 119.99925 * 59.99662 * 4 2 1 7 7 N 1.31515 * 120.00034 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99841 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47097 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47388 * 119.99755 * 8 6 4 11 11 H 1.48501 * 109.47101 * 240.00013 * 8 6 4 12 12 N 1.46499 * 109.47313 * 119.99943 * 2 1 3 13 13 C 1.34777 * 119.99839 * 299.99905 * 12 2 1 14 14 O 1.21279 * 120.00025 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99769 * 179.97438 * 13 12 2 16 16 C 1.53000 * 117.50175 * 248.62488 * 15 13 12 17 17 C 1.52997 * 60.00347 * 252.51187 * 16 15 13 18 18 H 1.08996 * 109.47268 * 300.00041 * 1 2 3 19 19 H 1.08999 * 109.47727 * 60.00118 * 1 2 3 20 20 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46958 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.47251 * 299.99687 * 3 2 1 23 23 H 1.08996 * 109.47383 * 60.00029 * 3 2 1 24 24 H 0.96998 * 119.99618 * 179.97438 * 7 6 4 25 25 H 0.96996 * 119.99814 * 120.00200 * 12 2 1 26 26 H 1.09004 * 115.56587 * 34.31293 * 15 13 12 27 27 H 1.09002 * 117.49696 * 0.02562 * 16 15 13 28 28 H 1.09002 * 117.50343 * 145.02291 * 16 15 13 29 29 H 1.08999 * 117.49685 * 252.51237 * 17 16 15 30 30 H 1.08999 * 117.52022 * 107.47599 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6928 -0.2301 2.4202 14 8 0.9952 0.7557 2.5315 15 6 2.1947 -0.9408 3.6507 16 6 1.1648 -1.6734 4.5129 17 6 1.7904 -0.3691 5.0111 18 1 -0.3633 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1299 1.4426 -0.0005 22 1 1.6765 1.9564 -0.8901 23 1 1.6765 1.9564 0.8899 24 1 0.7086 1.1613 -3.4844 25 1 2.5761 -1.4792 1.1071 26 1 3.1868 -1.3844 3.5659 27 1 0.1242 -1.6417 4.1900 28 1 1.4793 -2.5989 4.9954 29 1 2.5165 -0.4365 5.8212 30 1 1.1617 0.5213 5.0160 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259640897.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:09 Heat of formation + Delta-G solvation = -37.012847 kcal Electronic energy + Delta-G solvation = -12874.811201 eV Core-core repulsion = 10670.023714 eV Total energy + Delta-G solvation = -2204.787488 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.90391 -37.86281 -36.42752 -34.25629 -31.58319 -27.65496 -27.34481 -25.39091 -23.25565 -21.86974 -20.32087 -18.86516 -17.66761 -17.06138 -15.99548 -15.94185 -15.32880 -14.96509 -14.37651 -13.94199 -13.59883 -13.16876 -12.99234 -12.95507 -12.42828 -12.39198 -12.35606 -12.08487 -11.82130 -11.43367 -11.30546 -11.00310 -10.53787 -10.29276 -9.64803 -8.08743 -6.28415 1.44692 1.46732 1.57467 1.76488 2.37185 2.67963 3.04763 3.17219 3.89085 4.00813 4.09225 4.35407 4.68233 4.77214 4.87493 4.93036 5.04013 5.09954 5.20792 5.27638 5.29240 5.53149 5.55723 5.75323 5.92852 5.94631 6.25843 6.75294 7.11754 7.38776 7.66147 8.92480 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066015 B = 0.009420 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.042965 B = 2971.578304 C = 3146.577295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.285 3.715 3 C -0.133 4.133 4 C -0.538 4.538 5 H 0.069 0.931 6 C 0.021 3.979 7 N -0.907 5.907 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.704 5.704 13 C 0.521 3.479 14 O -0.593 6.593 15 C -0.204 4.204 16 C -0.141 4.141 17 C -0.147 4.147 18 H 0.025 0.975 19 H 0.066 0.934 20 H 0.022 0.978 21 H 0.022 0.978 22 H 0.066 0.934 23 H 0.026 0.974 24 H 0.263 0.737 25 H 0.402 0.598 26 H 0.146 0.854 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -6.230 9.354 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.201 3.799 3 C -0.192 4.192 4 C -0.577 4.577 5 H 0.087 0.913 6 C -0.179 4.179 7 N -0.545 5.545 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.352 5.352 13 C 0.309 3.691 14 O -0.475 6.475 15 C -0.225 4.225 16 C -0.178 4.178 17 C -0.184 4.184 18 H 0.044 0.956 19 H 0.084 0.916 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.236 0.764 26 H 0.164 0.836 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.054 -5.426 9.249 11.149 hybrid contribution 0.307 -0.342 -1.186 1.271 sum 3.361 -5.768 8.063 10.468 Atomic orbital electron populations 1.21913 0.98422 0.98482 1.00314 1.17960 0.90622 0.89534 0.81824 1.21919 0.97789 0.99144 1.00331 1.21459 1.32615 1.12920 0.90659 0.91324 1.25646 0.94877 0.95570 1.01831 1.69990 1.36791 1.23640 1.24080 0.85373 0.77967 0.78578 0.78847 1.18686 1.20872 1.20878 1.46376 1.51986 1.31164 1.05630 1.20398 0.79647 0.83901 0.85134 1.90567 1.40841 1.28666 1.87422 1.22323 1.02661 1.07267 0.90249 1.22995 0.96803 0.97498 1.00528 1.22974 1.03551 0.97458 0.94452 0.95569 0.91570 0.95916 0.95879 0.91565 0.95540 0.92732 0.76378 0.83591 0.90204 0.84591 0.85038 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 8.18 71.98 0.59 -6.44 16 2 C 0.29 14.53 0.78 2.86 0.00 14.53 16 3 C -0.13 -7.07 8.18 71.98 0.59 -6.48 16 4 C -0.54 -28.13 8.18 25.60 0.21 -27.92 16 5 H 0.07 3.39 7.60 -2.91 -0.02 3.37 16 6 C 0.02 1.11 5.15 84.66 0.44 1.54 16 7 N -0.91 -50.53 9.35 21.45 0.20 -50.33 16 8 Si 0.97 41.73 29.54 68.60 2.03 43.75 16 9 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.70 -29.79 5.10 -426.33 -2.17 -31.96 16 13 C 0.52 21.13 7.03 87.66 0.62 21.74 16 14 O -0.59 -28.88 12.47 -3.03 -0.04 -28.92 16 15 C -0.20 -5.70 6.19 -11.54 -0.07 -5.78 16 16 C -0.14 -3.22 10.23 30.59 0.31 -2.91 16 17 C -0.15 -3.55 10.04 30.60 0.31 -3.25 16 18 H 0.03 1.38 6.17 -2.39 -0.01 1.37 16 19 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 20 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 23 H 0.03 1.40 6.17 -2.39 -0.01 1.39 16 24 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.40 14.60 8.32 -92.71 -0.77 13.82 16 26 H 0.15 3.19 8.14 -2.38 -0.02 3.17 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 2.39 7.67 -2.39 -0.02 2.37 16 Total: -1.00 -63.89 246.96 3.37 -60.52 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.36 Total: 21.90 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 2.99 Total: -14.96 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.97 Total: -82.30 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.04 Total: -28.92 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -63.89 3.37 -60.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640897.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.506 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds