Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46796 * 111.00224 * 2 1 4 4 C 1.53015 * 109.89560 * 170.54592 * 3 2 1 5 5 C 1.53376 * 109.13807 * 62.84933 * 4 3 2 6 6 C 1.51415 * 108.11852 * 307.53838 * 5 4 3 7 7 O 1.20766 * 121.00581 * 229.11883 * 6 5 4 8 8 C 1.47085 * 110.99924 * 235.82053 * 2 1 3 9 9 H 1.09006 * 109.62072 * 60.55045 * 8 2 1 10 10 C 1.52999 * 109.63250 * 300.16826 * 8 2 1 11 11 C 1.50699 * 109.46975 * 303.03725 * 10 8 2 12 12 H 1.07997 * 120.00154 * 5.59994 * 11 10 8 13 13 C 1.37873 * 119.99770 * 185.60523 * 11 10 8 14 14 N 1.31523 * 120.00019 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00352 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46913 * 89.99977 * 15 13 11 17 17 H 1.48498 * 109.47386 * 210.00085 * 15 13 11 18 18 H 1.48500 * 109.46837 * 330.00423 * 15 13 11 19 19 H 1.09002 * 109.47789 * 190.54650 * 1 2 3 20 20 H 1.09003 * 109.46801 * 70.54703 * 1 2 3 21 21 H 1.09005 * 109.47519 * 310.55093 * 1 2 3 22 22 H 1.09000 * 109.39248 * 290.67308 * 3 2 1 23 23 H 1.08995 * 109.40238 * 50.40876 * 3 2 1 24 24 H 1.08996 * 109.52626 * 302.94950 * 4 3 2 25 25 H 1.08998 * 109.58220 * 182.78190 * 4 3 2 26 26 H 1.08992 * 109.73413 * 187.88007 * 5 4 3 27 27 H 1.09006 * 109.76735 * 67.21160 * 5 4 3 28 28 H 1.08996 * 109.46690 * 63.03602 * 10 8 2 29 29 H 1.08996 * 109.47295 * 183.03420 * 10 8 2 30 30 H 0.96998 * 120.00180 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3704 0.0000 4 6 3.5067 1.3479 0.2363 5 6 4.1856 0.6046 -0.9209 6 6 3.5079 -0.7403 -1.0786 7 8 4.1544 -1.7574 -1.1559 8 6 1.9961 -0.7714 -1.1360 9 1 1.6560 -0.3254 -2.0706 10 6 1.5042 -2.2175 -1.0478 11 6 1.9205 -2.8100 0.2738 12 1 2.4000 -2.1897 1.0166 13 6 1.6894 -4.1439 0.5346 14 7 2.0532 -4.6612 1.6879 15 14 0.8597 -5.2167 -0.7498 16 1 1.8910 -5.8232 -1.6294 17 1 0.0904 -6.2925 -0.0744 18 1 -0.0621 -4.3873 -1.5669 19 1 -0.3635 -1.0103 0.1881 20 1 -0.3633 0.3423 -0.9690 21 1 -0.3634 0.6681 0.7809 22 1 1.7860 1.8384 -0.9620 23 1 1.5132 1.9433 0.7922 24 1 3.7212 0.8356 1.1742 25 1 3.8842 2.3693 0.2846 26 1 5.2422 0.4601 -0.6960 27 1 4.0803 1.1799 -1.8407 28 1 0.4174 -2.2371 -1.1285 29 1 1.9394 -2.7995 -1.8601 30 1 1.8903 -5.5996 1.8715 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = -29.890244 kcal Electronic energy + Delta-G solvation = -13154.840679 eV Core-core repulsion = 10950.362050 eV Total energy + Delta-G solvation = -2204.478628 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49417 -36.72282 -33.60130 -32.18050 -30.28737 -27.06042 -26.31420 -23.26378 -21.53558 -20.54929 -18.34639 -16.60991 -15.52820 -15.42513 -14.65824 -14.13783 -14.08903 -13.83350 -13.11137 -12.52552 -12.19958 -12.10427 -11.87511 -11.69558 -11.45072 -10.84095 -10.77172 -10.66072 -10.25031 -9.98624 -9.60993 -9.12538 -8.60368 -8.32672 -7.67535 -5.82535 -3.75560 2.72340 3.41812 3.48334 3.49289 4.45108 4.61331 4.67433 5.09504 5.17073 5.35828 5.51422 5.65046 5.70727 5.77593 5.89673 5.93367 5.97561 6.01084 6.21706 6.43760 6.55230 6.59772 7.04389 7.25096 7.59109 7.65007 7.95089 8.33774 8.77067 9.30390 9.80048 11.31762 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.013151 C = 0.011913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.401883 B = 2128.640307 C = 2349.730901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.510 5.510 3 C 0.048 3.952 4 C -0.109 4.109 5 C -0.172 4.172 6 C 0.368 3.632 7 O -0.420 6.420 8 C 0.055 3.945 9 H 0.045 0.955 10 C -0.004 4.004 11 C -0.479 4.479 12 H 0.081 0.919 13 C 0.063 3.937 14 N -0.908 5.908 15 Si 0.872 3.128 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.270 1.270 19 H 0.085 0.915 20 H 0.014 0.986 21 H 0.060 0.940 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 12.820 -5.458 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.236 5.236 3 C -0.080 4.080 4 C -0.147 4.147 5 C -0.210 4.210 6 C 0.239 3.761 7 O -0.289 6.289 8 C -0.053 4.053 9 H 0.063 0.937 10 C -0.042 4.042 11 C -0.517 4.517 12 H 0.099 0.901 13 C -0.137 4.137 14 N -0.549 5.549 15 Si 0.700 3.300 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.195 1.195 19 H 0.104 0.896 20 H 0.033 0.967 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.529 11.853 -4.977 12.866 hybrid contribution -0.764 -0.188 -1.356 1.567 sum -1.293 11.665 -6.333 13.336 Atomic orbital electron populations 1.22344 0.86866 1.03666 0.98614 1.61834 1.07962 1.10990 1.42804 1.22160 0.95489 0.90500 0.99856 1.21522 0.94543 0.99775 0.98841 1.22415 1.01260 0.97172 1.00190 1.24518 0.91240 0.89248 0.71121 1.90410 1.67846 1.37077 1.33522 1.22329 0.93606 0.98443 0.90971 0.93741 1.19608 0.95955 0.89313 0.99279 1.20883 1.37482 0.94500 0.98818 0.90099 1.24959 0.95838 0.97819 0.95041 1.69906 1.48858 1.13216 1.22883 0.86924 0.79979 0.80703 0.82415 1.20530 1.21678 1.19526 0.89633 0.96737 0.92146 0.95485 0.90657 0.90307 0.91133 0.89810 0.89628 0.96205 0.96007 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.08 60.06 0.55 1.09 16 2 N -0.51 -9.47 4.02 -235.84 -0.95 -10.42 16 3 C 0.05 0.68 5.37 -3.87 -0.02 0.66 16 4 C -0.11 -1.49 6.13 -26.53 -0.16 -1.65 16 5 C -0.17 -2.57 6.24 -27.34 -0.17 -2.74 16 6 C 0.37 7.52 6.26 -28.38 -0.18 7.34 16 7 O -0.42 -10.45 16.14 5.99 0.10 -10.35 16 8 C 0.06 1.11 2.29 -68.46 -0.16 0.96 16 9 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 10 C 0.00 -0.10 3.01 -27.88 -0.08 -0.19 16 11 C -0.48 -13.95 8.06 -34.44 -0.28 -14.23 16 12 H 0.08 2.59 7.61 -52.49 -0.40 2.19 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -29.19 13.96 55.43 0.77 -28.42 16 15 Si 0.87 22.66 27.36 -169.99 -4.65 18.01 16 16 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 18 H -0.27 -6.65 6.71 56.52 0.38 -6.27 16 19 H 0.09 1.64 6.75 -51.93 -0.35 1.29 16 20 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 21 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16 22 H 0.03 0.34 8.13 -51.93 -0.42 -0.08 16 23 H 0.07 0.95 7.93 -51.93 -0.41 0.53 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.02 0.47 6.18 -51.93 -0.32 0.15 16 29 H 0.02 0.56 7.09 -51.93 -0.37 0.19 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 243.06 15.07 3.66 3.66 Total: -1.00 -33.74 243.06 -6.05 -39.79 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -4.38 Total: -5.33 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.60 Total: -6.95 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.17 Total: -38.83 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.10 Total: -10.35 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.65 Total: 18.01 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.74 -6.05 -39.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.899 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds