Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46796 * 111.00224 * 2 1 4 4 C 1.53015 * 109.89560 * 170.54592 * 3 2 1 5 5 C 1.53376 * 109.13807 * 62.84933 * 4 3 2 6 6 C 1.51415 * 108.11852 * 307.53838 * 5 4 3 7 7 O 1.20766 * 121.00581 * 229.11883 * 6 5 4 8 8 C 1.47085 * 110.99924 * 235.82053 * 2 1 3 9 9 H 1.09006 * 109.62072 * 60.55045 * 8 2 1 10 10 C 1.52999 * 109.63250 * 300.16826 * 8 2 1 11 11 C 1.50699 * 109.46975 * 303.03725 * 10 8 2 12 12 H 1.07997 * 120.00154 * 5.59994 * 11 10 8 13 13 C 1.37873 * 119.99770 * 185.60523 * 11 10 8 14 14 N 1.31523 * 120.00019 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00352 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46913 * 89.99977 * 15 13 11 17 17 H 1.48498 * 109.47386 * 210.00085 * 15 13 11 18 18 H 1.48500 * 109.46837 * 330.00423 * 15 13 11 19 19 H 1.09002 * 109.47789 * 190.54650 * 1 2 3 20 20 H 1.09003 * 109.46801 * 70.54703 * 1 2 3 21 21 H 1.09005 * 109.47519 * 310.55093 * 1 2 3 22 22 H 1.09000 * 109.39248 * 290.67308 * 3 2 1 23 23 H 1.08995 * 109.40238 * 50.40876 * 3 2 1 24 24 H 1.08996 * 109.52626 * 302.94950 * 4 3 2 25 25 H 1.08998 * 109.58220 * 182.78190 * 4 3 2 26 26 H 1.08992 * 109.73413 * 187.88007 * 5 4 3 27 27 H 1.09006 * 109.76735 * 67.21160 * 5 4 3 28 28 H 1.08996 * 109.46690 * 63.03602 * 10 8 2 29 29 H 1.08996 * 109.47295 * 183.03420 * 10 8 2 30 30 H 0.96998 * 120.00180 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3704 0.0000 4 6 3.5067 1.3479 0.2363 5 6 4.1856 0.6046 -0.9209 6 6 3.5079 -0.7403 -1.0786 7 8 4.1544 -1.7574 -1.1559 8 6 1.9961 -0.7714 -1.1360 9 1 1.6560 -0.3254 -2.0706 10 6 1.5042 -2.2175 -1.0478 11 6 1.9205 -2.8100 0.2738 12 1 2.4000 -2.1897 1.0166 13 6 1.6894 -4.1439 0.5346 14 7 2.0532 -4.6612 1.6879 15 14 0.8597 -5.2167 -0.7498 16 1 1.8910 -5.8232 -1.6294 17 1 0.0904 -6.2925 -0.0744 18 1 -0.0621 -4.3873 -1.5669 19 1 -0.3635 -1.0103 0.1881 20 1 -0.3633 0.3423 -0.9690 21 1 -0.3634 0.6681 0.7809 22 1 1.7860 1.8384 -0.9620 23 1 1.5132 1.9433 0.7922 24 1 3.7212 0.8356 1.1742 25 1 3.8842 2.3693 0.2846 26 1 5.2422 0.4601 -0.6960 27 1 4.0803 1.1799 -1.8407 28 1 0.4174 -2.2371 -1.1285 29 1 1.9394 -2.7995 -1.8601 30 1 1.8903 -5.5996 1.8715 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = -54.867727 kcal Electronic energy + Delta-G solvation = -13155.923783 eV Core-core repulsion = 10950.362050 eV Total energy + Delta-G solvation = -2205.561733 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.01427 -38.23592 -35.32920 -33.96771 -32.06732 -28.66146 -27.72473 -25.03898 -22.85737 -22.16222 -19.92290 -18.72367 -17.02417 -16.91165 -16.27551 -15.85554 -15.54608 -15.43702 -14.55726 -14.47952 -13.70221 -13.60533 -13.40073 -13.24107 -13.10485 -12.47741 -12.35897 -11.94108 -11.80100 -11.66666 -11.54365 -11.34773 -10.67684 -10.15409 -8.99177 -8.15483 -6.12190 1.17642 1.33162 1.35942 1.45060 2.41662 3.12018 3.18032 3.32005 3.90259 3.99933 4.14339 4.30788 4.52936 4.54635 4.63823 4.71333 4.78570 4.94048 4.97652 5.05034 5.15818 5.25280 5.35527 5.40830 5.72522 6.18884 6.37813 6.49294 6.79207 6.93925 7.46223 9.02421 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.013151 C = 0.011913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.401883 B = 2128.640307 C = 2349.730901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.544 5.544 3 C 0.047 3.953 4 C -0.106 4.106 5 C -0.162 4.162 6 C 0.358 3.642 7 O -0.483 6.483 8 C 0.052 3.948 9 H 0.080 0.920 10 C -0.005 4.005 11 C -0.466 4.466 12 H 0.037 0.963 13 C -0.008 4.008 14 N -0.961 5.961 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.244 1.244 19 H 0.048 0.952 20 H 0.039 0.961 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.046 0.954 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.031 0.969 29 H 0.011 0.989 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 15.282 -7.257 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.271 5.271 3 C -0.080 4.080 4 C -0.143 4.143 5 C -0.200 4.200 6 C 0.234 3.766 7 O -0.356 6.356 8 C -0.057 4.057 9 H 0.098 0.902 10 C -0.042 4.042 11 C -0.505 4.505 12 H 0.055 0.945 13 C -0.202 4.202 14 N -0.604 5.604 15 Si 0.765 3.235 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.168 1.168 19 H 0.067 0.933 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.134 0.866 26 H 0.103 0.897 27 H 0.146 0.854 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.490 14.368 -6.788 15.960 hybrid contribution -0.447 -0.847 -0.733 1.206 sum -1.937 13.521 -7.521 15.592 Atomic orbital electron populations 1.22294 0.85990 1.02147 1.00794 1.61734 1.09105 1.13837 1.42448 1.22300 0.95417 0.88126 1.02153 1.21584 0.94592 1.01602 0.96565 1.22423 1.00748 0.94109 1.02688 1.25406 0.91729 0.90814 0.68660 1.90390 1.68926 1.39625 1.36675 1.22235 0.93826 0.96222 0.93375 0.90225 1.19531 0.96398 0.92394 0.95912 1.21040 1.35603 0.94039 0.99787 0.94490 1.25910 0.97211 0.99725 0.97352 1.70079 1.51297 1.13649 1.25382 0.85812 0.79176 0.78864 0.79614 1.20701 1.21135 1.16766 0.93290 0.94263 0.89903 0.92509 0.88781 0.93469 0.86573 0.89698 0.85436 0.95135 0.97065 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 9.08 127.69 1.16 2.25 16 2 N -0.54 -19.13 4.02 -900.05 -3.62 -22.75 16 3 C 0.05 1.14 5.37 86.33 0.46 1.60 16 4 C -0.11 -2.52 6.13 30.73 0.19 -2.33 16 5 C -0.16 -4.35 6.24 30.20 0.19 -4.16 16 6 C 0.36 14.38 6.26 29.53 0.18 14.57 16 7 O -0.48 -24.66 16.14 -1.47 -0.02 -24.68 16 8 C 0.05 2.02 2.29 44.33 0.10 2.12 16 9 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 10 C 0.00 -0.24 3.01 29.85 0.09 -0.15 16 11 C -0.47 -28.02 8.06 25.60 0.21 -27.82 16 12 H 0.04 2.49 7.61 -2.91 -0.02 2.47 16 13 C -0.01 -0.50 5.47 84.65 0.46 -0.04 16 14 N -0.96 -64.26 13.96 21.45 0.30 -63.97 16 15 Si 0.94 47.54 27.36 68.60 1.88 49.42 16 16 H -0.28 -14.18 7.11 99.48 0.71 -13.48 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 18 H -0.24 -11.18 6.71 99.48 0.67 -10.51 16 19 H 0.05 1.84 6.75 -2.39 -0.02 1.83 16 20 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 21 H 0.08 2.13 7.92 -2.38 -0.02 2.12 16 22 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 23 H 0.09 1.94 7.93 -2.39 -0.02 1.93 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.03 1.42 6.18 -2.39 -0.01 1.40 16 29 H 0.01 0.56 7.09 -2.39 -0.02 0.55 16 30 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -77.76 243.06 2.64 -75.11 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 1.07 Total: 0.82 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 3.04 Total: -13.95 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -3.32 Total: -86.71 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.02 Total: -24.68 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.88 Total: 49.42 kcal Total: -77.76 2.64 -75.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.243 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds