Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46796 * 111.00484 * 2 1 4 4 C 1.53013 * 109.89617 * 189.45454 * 3 2 1 5 5 C 1.53382 * 109.12926 * 297.13894 * 4 3 2 6 6 C 1.51412 * 108.11980 * 52.46935 * 5 4 3 7 7 O 1.20755 * 121.00812 * 130.87907 * 6 5 4 8 8 C 1.46669 * 111.05264 * 124.32115 * 2 1 3 9 9 H 1.09005 * 109.45402 * 299.63627 * 8 2 1 10 10 C 1.53003 * 109.56976 * 60.06031 * 8 2 1 11 11 C 1.50695 * 109.47265 * 185.07442 * 10 8 2 12 12 H 1.08003 * 119.99874 * 5.36923 * 11 10 8 13 13 C 1.37880 * 120.00140 * 185.37444 * 11 10 8 14 14 N 1.31515 * 120.00032 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99807 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46902 * 90.00433 * 15 13 11 17 17 H 1.48500 * 109.46966 * 209.99977 * 15 13 11 18 18 H 1.48500 * 109.47331 * 330.00453 * 15 13 11 19 19 H 1.08999 * 109.46387 * 53.07152 * 1 2 3 20 20 H 1.08996 * 109.47418 * 173.07209 * 1 2 3 21 21 H 1.09001 * 109.47333 * 293.08126 * 1 2 3 22 22 H 1.09000 * 109.40217 * 69.31354 * 3 2 1 23 23 H 1.09001 * 109.39286 * 309.58194 * 3 2 1 24 24 H 1.09001 * 109.52518 * 177.24790 * 4 3 2 25 25 H 1.08993 * 109.53142 * 57.03609 * 4 3 2 26 26 H 1.09001 * 109.73466 * 292.80619 * 5 4 3 27 27 H 1.08997 * 109.76857 * 172.14784 * 5 4 3 28 28 H 1.08998 * 109.47553 * 305.08256 * 10 8 2 29 29 H 1.09005 * 109.46512 * 65.08270 * 10 8 2 30 30 H 0.96992 * 120.00138 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3704 0.0000 4 6 3.5068 1.3478 -0.2363 5 6 4.1855 0.6047 0.9211 6 6 3.5079 -0.7401 1.0790 7 8 4.1543 -1.7572 1.1565 8 6 1.9959 -0.7718 1.1305 9 1 1.6520 -0.3279 2.0648 10 6 1.5085 -2.2189 1.0346 11 6 1.9467 -2.9788 2.2599 12 1 2.4397 -2.4605 3.0691 13 6 1.7182 -4.3357 2.3480 14 7 2.1002 -4.9987 3.4177 15 14 0.8650 -5.2319 0.9487 16 1 1.8802 -5.7173 -0.0202 17 1 0.1060 -6.3874 1.4909 18 1 -0.0695 -4.3035 0.2631 19 1 -0.3632 0.6175 -0.8215 20 1 -0.3634 -1.0201 -0.1239 21 1 -0.3634 0.4029 0.9454 22 1 1.7860 1.8386 0.9618 23 1 1.5134 1.9431 -0.7924 24 1 3.8834 2.3696 -0.2839 25 1 3.7214 0.8353 -1.1740 26 1 4.0796 1.1804 1.8406 27 1 5.2424 0.4602 0.6972 28 1 0.4206 -2.2324 0.9683 29 1 1.9325 -2.6869 0.1460 30 1 1.9391 -5.9532 3.4798 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674671.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = -33.418846 kcal Electronic energy + Delta-G solvation = -13014.749567 eV Core-core repulsion = 10810.117927 eV Total energy + Delta-G solvation = -2204.631640 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.54729 -36.80492 -33.67943 -32.38451 -30.36308 -27.21234 -26.44283 -23.22966 -21.67169 -20.54408 -18.42709 -16.87272 -15.56888 -15.32705 -14.77327 -14.43152 -14.17752 -13.61136 -13.24031 -12.81939 -12.37818 -12.23946 -12.02676 -11.78222 -11.19010 -11.05022 -10.85659 -10.72348 -10.27091 -9.99953 -9.73168 -9.22464 -8.62638 -8.37558 -7.98466 -5.93430 -3.88720 2.72870 3.39420 3.45528 3.48304 4.27553 4.54643 4.66790 4.99833 5.06537 5.26416 5.42389 5.56037 5.63159 5.73169 5.79753 5.84279 5.91130 5.97748 6.16390 6.24494 6.28947 6.62093 7.03968 7.23052 7.42001 7.49386 7.86599 8.35141 8.59570 9.08048 9.68206 11.20665 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043624 B = 0.012465 C = 0.010615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.690915 B = 2245.827082 C = 2637.091249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.049 3.951 4 C -0.108 4.108 5 C -0.175 4.175 6 C 0.362 3.638 7 O -0.411 6.411 8 C 0.052 3.948 9 H 0.064 0.936 10 C 0.004 3.996 11 C -0.501 4.501 12 H 0.067 0.933 13 C 0.068 3.932 14 N -0.905 5.905 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.267 1.267 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.025 0.975 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 13.432 -7.223 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.265 5.265 3 C -0.079 4.079 4 C -0.146 4.146 5 C -0.213 4.213 6 C 0.232 3.768 7 O -0.278 6.278 8 C -0.056 4.056 9 H 0.082 0.918 10 C -0.034 4.034 11 C -0.540 4.540 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.545 5.545 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.192 1.192 19 H 0.080 0.920 20 H 0.096 0.904 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.708 12.456 -7.524 14.569 hybrid contribution -0.711 -0.055 0.164 0.732 sum -1.419 12.401 -7.360 14.490 Atomic orbital electron populations 1.22392 0.86976 1.03054 0.99719 1.61901 1.08110 1.12339 1.44108 1.22125 0.95411 0.90054 1.00331 1.21520 0.94486 1.00033 0.98532 1.22452 1.01136 0.97397 1.00287 1.24508 0.91282 0.89321 0.71672 1.90461 1.67610 1.37189 1.32545 1.22359 0.93558 0.98073 0.91625 0.91799 1.19539 0.96162 0.89127 0.98540 1.20866 1.37996 0.93290 1.01834 0.91445 1.24906 0.95402 0.97360 0.95569 1.69903 1.47895 1.08426 1.28237 0.86791 0.80117 0.79420 0.82970 1.20275 1.21561 1.19168 0.91957 0.90384 0.95610 0.94798 0.90694 0.90917 0.90761 0.89349 0.89784 0.95952 0.95742 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.16 60.07 0.55 0.94 16 2 N -0.54 -9.04 4.70 -236.18 -1.11 -10.15 16 3 C 0.05 0.63 5.37 -3.87 -0.02 0.61 16 4 C -0.11 -1.31 6.13 -26.53 -0.16 -1.48 16 5 C -0.17 -2.56 6.24 -27.34 -0.17 -2.73 16 6 C 0.36 7.45 6.55 -28.38 -0.19 7.27 16 7 O -0.41 -10.41 15.82 6.00 0.09 -10.32 16 8 C 0.05 1.06 2.03 -68.69 -0.14 0.93 16 9 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 10 C 0.00 0.10 3.12 -27.88 -0.09 0.01 16 11 C -0.50 -14.84 8.13 -34.44 -0.28 -15.12 16 12 H 0.07 2.16 7.97 -52.48 -0.42 1.74 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.91 -29.02 13.96 55.43 0.77 -28.24 16 15 Si 0.88 22.76 27.37 -169.99 -4.65 18.11 16 16 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.27 -6.53 6.70 56.52 0.38 -6.16 16 19 H 0.06 0.75 8.00 -51.93 -0.42 0.33 16 20 H 0.08 1.28 6.35 -51.93 -0.33 0.95 16 21 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 23 H 0.07 0.81 7.98 -51.93 -0.41 0.39 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.02 0.54 5.64 -51.93 -0.29 0.25 16 29 H 0.02 0.64 7.24 -51.93 -0.38 0.26 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 243.41 15.07 3.67 3.67 Total: -1.00 -33.74 243.41 -6.18 -39.92 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -4.36 Total: -5.38 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.59 Total: -7.59 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.34 Total: -38.39 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.65 Total: 18.11 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.74 -6.18 -39.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674671.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.498 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds