Wall clock time and date at job start Mon Mar 30 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46796 * 111.00484 * 2 1 4 4 C 1.53013 * 109.89617 * 189.45454 * 3 2 1 5 5 C 1.53382 * 109.12926 * 297.13894 * 4 3 2 6 6 C 1.51412 * 108.11980 * 52.46935 * 5 4 3 7 7 O 1.20755 * 121.00812 * 130.87907 * 6 5 4 8 8 C 1.46669 * 111.05264 * 124.32115 * 2 1 3 9 9 H 1.09005 * 109.45402 * 299.63627 * 8 2 1 10 10 C 1.53003 * 109.56976 * 60.06031 * 8 2 1 11 11 C 1.50695 * 109.47265 * 185.07442 * 10 8 2 12 12 H 1.08003 * 119.99874 * 5.36923 * 11 10 8 13 13 C 1.37880 * 120.00140 * 185.37444 * 11 10 8 14 14 N 1.31515 * 120.00032 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99807 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46902 * 90.00433 * 15 13 11 17 17 H 1.48500 * 109.46966 * 209.99977 * 15 13 11 18 18 H 1.48500 * 109.47331 * 330.00453 * 15 13 11 19 19 H 1.08999 * 109.46387 * 53.07152 * 1 2 3 20 20 H 1.08996 * 109.47418 * 173.07209 * 1 2 3 21 21 H 1.09001 * 109.47333 * 293.08126 * 1 2 3 22 22 H 1.09000 * 109.40217 * 69.31354 * 3 2 1 23 23 H 1.09001 * 109.39286 * 309.58194 * 3 2 1 24 24 H 1.09001 * 109.52518 * 177.24790 * 4 3 2 25 25 H 1.08993 * 109.53142 * 57.03609 * 4 3 2 26 26 H 1.09001 * 109.73466 * 292.80619 * 5 4 3 27 27 H 1.08997 * 109.76857 * 172.14784 * 5 4 3 28 28 H 1.08998 * 109.47553 * 305.08256 * 10 8 2 29 29 H 1.09005 * 109.46512 * 65.08270 * 10 8 2 30 30 H 0.96992 * 120.00138 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3704 0.0000 4 6 3.5068 1.3478 -0.2363 5 6 4.1855 0.6047 0.9211 6 6 3.5079 -0.7401 1.0790 7 8 4.1543 -1.7572 1.1565 8 6 1.9959 -0.7718 1.1305 9 1 1.6520 -0.3279 2.0648 10 6 1.5085 -2.2189 1.0346 11 6 1.9467 -2.9788 2.2599 12 1 2.4397 -2.4605 3.0691 13 6 1.7182 -4.3357 2.3480 14 7 2.1002 -4.9987 3.4177 15 14 0.8650 -5.2319 0.9487 16 1 1.8802 -5.7173 -0.0202 17 1 0.1060 -6.3874 1.4909 18 1 -0.0695 -4.3035 0.2631 19 1 -0.3632 0.6175 -0.8215 20 1 -0.3634 -1.0201 -0.1239 21 1 -0.3634 0.4029 0.9454 22 1 1.7860 1.8386 0.9618 23 1 1.5134 1.9431 -0.7924 24 1 3.8834 2.3696 -0.2839 25 1 3.7214 0.8353 -1.1740 26 1 4.0796 1.1804 1.8406 27 1 5.2424 0.4602 0.6972 28 1 0.4206 -2.2324 0.9683 29 1 1.9325 -2.6869 0.1460 30 1 1.9391 -5.9532 3.4798 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674671.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:49 Heat of formation + Delta-G solvation = -58.862102 kcal Electronic energy + Delta-G solvation = -13015.852870 eV Core-core repulsion = 10810.117927 eV Total energy + Delta-G solvation = -2205.734942 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.06603 -38.29619 -35.43760 -34.09978 -32.17889 -28.77963 -27.77533 -24.97619 -22.96200 -22.15053 -19.91354 -19.04284 -17.02421 -16.86874 -16.50211 -15.96818 -15.52427 -15.25934 -14.75377 -14.52024 -14.08648 -13.69721 -13.37035 -13.23845 -13.00736 -12.62664 -12.23242 -11.96089 -11.90748 -11.76254 -11.59307 -11.43369 -10.77771 -10.16154 -9.26982 -8.27952 -6.28116 1.14523 1.31350 1.34710 1.45223 2.35327 2.99789 3.06396 3.28395 3.86752 3.96416 4.12004 4.27139 4.48363 4.55317 4.60377 4.69245 4.77209 4.92071 4.98145 5.00519 5.12621 5.22533 5.31540 5.37477 5.60592 6.01519 6.18943 6.27504 6.70191 6.79869 7.32156 8.89865 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043624 B = 0.012465 C = 0.010615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.690915 B = 2245.827082 C = 2637.091249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.044 3.956 4 C -0.101 4.101 5 C -0.165 4.165 6 C 0.354 3.646 7 O -0.477 6.477 8 C 0.052 3.948 9 H 0.061 0.939 10 C 0.009 3.991 11 C -0.504 4.504 12 H 0.024 0.976 13 C 0.001 3.999 14 N -0.954 5.954 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.279 1.279 18 H -0.242 1.242 19 H 0.098 0.902 20 H 0.056 0.944 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.108 0.892 24 H 0.116 0.884 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.033 0.967 29 H 0.009 0.991 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 15.819 -9.281 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.203 4.203 6 C 0.229 3.771 7 O -0.349 6.349 8 C -0.057 4.057 9 H 0.079 0.921 10 C -0.029 4.029 11 C -0.542 4.542 12 H 0.042 0.958 13 C -0.195 4.195 14 N -0.596 5.596 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.204 1.204 18 H -0.166 1.166 19 H 0.116 0.884 20 H 0.075 0.925 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.126 0.874 24 H 0.135 0.865 25 H 0.085 0.915 26 H 0.130 0.870 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.724 14.898 -9.594 17.803 hybrid contribution -0.380 -0.703 0.858 1.172 sum -2.103 14.195 -8.736 16.800 Atomic orbital electron populations 1.22460 0.85834 1.02570 1.01463 1.61880 1.09287 1.14645 1.41657 1.22345 0.95900 0.87806 1.02223 1.21596 0.93889 1.01841 0.96569 1.22458 1.01171 0.93886 1.02751 1.25408 0.91560 0.91065 0.69084 1.90437 1.68667 1.39952 1.35801 1.22131 0.94158 0.96141 0.93227 0.92106 1.19383 0.96522 0.91715 0.95242 1.21147 1.36873 0.93786 1.02438 0.95797 1.25922 0.96521 0.98490 0.98532 1.70062 1.49891 1.08939 1.30696 0.85681 0.79282 0.78514 0.79253 1.20352 1.20428 1.16559 0.88374 0.92545 0.95115 0.93657 0.87413 0.86535 0.91490 0.86989 0.89069 0.94857 0.97275 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.16 127.69 1.17 1.82 16 2 N -0.55 -16.95 4.70 -901.13 -4.23 -21.18 16 3 C 0.04 0.94 5.37 86.33 0.46 1.40 16 4 C -0.10 -2.02 6.13 30.73 0.19 -1.83 16 5 C -0.16 -4.43 6.24 30.20 0.19 -4.24 16 6 C 0.35 14.62 6.55 29.52 0.19 14.81 16 7 O -0.48 -25.16 15.82 -1.43 -0.02 -25.18 16 8 C 0.05 2.12 2.03 44.41 0.09 2.21 16 9 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 10 C 0.01 0.45 3.12 29.85 0.09 0.55 16 11 C -0.50 -31.01 8.13 25.60 0.21 -30.80 16 12 H 0.02 1.62 7.97 -2.91 -0.02 1.60 16 13 C 0.00 0.07 5.47 84.66 0.46 0.53 16 14 N -0.95 -63.50 13.96 21.45 0.30 -63.20 16 15 Si 0.95 47.62 27.37 68.60 1.88 49.50 16 16 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.24 -11.07 6.70 99.48 0.67 -10.40 16 19 H 0.10 1.92 8.00 -2.39 -0.02 1.90 16 20 H 0.06 1.73 6.35 -2.39 -0.02 1.72 16 21 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 23 H 0.11 1.67 7.98 -2.39 -0.02 1.65 16 24 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.03 1.59 5.64 -2.39 -0.01 1.58 16 29 H 0.01 0.47 7.24 -2.38 -0.02 0.46 16 30 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -77.67 243.41 2.05 -75.62 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 1.07 Total: 0.01 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 3.06 Total: -15.56 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.93 Total: -84.38 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.02 Total: -25.18 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.88 Total: 49.50 kcal Total: -77.67 2.05 -75.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674671.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.757 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds