Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.44736 * 110.97861 * 2 1 4 4 C 1.52102 * 109.40105 * 141.54265 * 3 2 1 5 5 C 1.47576 * 114.67011 * 88.54444 * 4 3 2 6 6 C 1.55092 * 109.45645 * 297.10620 * 5 4 3 7 7 H 1.09003 * 109.46753 * 308.01666 * 6 5 4 8 8 C 1.50702 * 109.46652 * 188.02614 * 6 5 4 9 9 H 1.08001 * 120.00190 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99520 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00346 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99654 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47183 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47273 * 120.00073 * 12 10 8 15 15 H 1.48504 * 109.47118 * 239.99854 * 12 10 8 16 16 C 1.49169 * 109.48773 * 68.02271 * 6 5 4 17 17 O 1.20762 * 118.62486 * 92.53976 * 16 6 5 18 18 C 1.47963 * 110.99901 * 236.37989 * 2 1 3 19 19 H 1.08997 * 109.47091 * 187.57060 * 1 2 3 20 20 H 1.08994 * 109.47138 * 307.57279 * 1 2 3 21 21 H 1.09001 * 109.47214 * 67.57250 * 1 2 3 22 22 H 1.08996 * 109.48264 * 21.56571 * 3 2 1 23 23 H 1.09002 * 109.48513 * 261.52456 * 3 2 1 24 24 H 1.08994 * 108.44532 * 327.19904 * 4 3 2 25 25 H 1.09009 * 108.44360 * 209.88994 * 4 3 2 26 26 H 1.08994 * 109.47090 * 57.10317 * 5 4 3 27 27 H 1.09003 * 109.47427 * 177.10621 * 5 4 3 28 28 H 0.97004 * 119.99876 * 179.97438 * 11 10 8 29 29 H 1.09003 * 108.96868 * 43.33376 * 18 2 1 30 30 H 1.08993 * 108.97185 * 284.64436 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9872 1.3514 0.0000 4 6 3.2170 1.4210 0.8923 5 6 4.4904 1.1175 0.2108 6 6 4.4647 -0.3452 -0.3044 7 1 4.1911 -1.0132 0.5122 8 6 5.8294 -0.7189 -0.8232 9 1 6.6341 0.0009 -0.7938 10 6 6.0506 -1.9797 -1.3355 11 7 5.0706 -2.8560 -1.3718 12 14 7.7419 -2.4427 -1.9793 13 1 8.6624 -1.2873 -1.8283 14 1 8.2662 -3.5980 -1.2074 15 1 7.6416 -2.8109 -3.4144 16 6 3.4641 -0.4680 -1.4039 17 8 3.8364 -0.3246 -2.5437 18 6 1.9992 -0.7648 -1.1503 19 1 -0.3633 -1.0187 0.1354 20 1 -0.3633 0.6266 0.8145 21 1 -0.3634 0.3921 -0.9499 22 1 1.2251 2.0330 0.3777 23 1 2.2588 1.6367 -1.0164 24 1 3.0882 0.7151 1.7127 25 1 3.2817 2.4246 1.3129 26 1 4.6230 1.7970 -0.6309 27 1 5.3161 1.2415 0.9115 28 1 5.2262 -3.7429 -1.7326 29 1 1.4262 -0.5077 -2.0412 30 1 1.8829 -1.8301 -0.9514 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259687103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = -36.415928 kcal Electronic energy + Delta-G solvation = -13195.666865 eV Core-core repulsion = 10990.905262 eV Total energy + Delta-G solvation = -2204.761603 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.09756 -36.46781 -34.11560 -32.28647 -29.26685 -27.66997 -25.61461 -23.00908 -22.64809 -19.73500 -18.01939 -16.31810 -15.74934 -15.24087 -14.54563 -14.35488 -13.34245 -13.30979 -13.03649 -12.69091 -12.51014 -12.11879 -11.58906 -11.40209 -11.06714 -10.85047 -10.64338 -10.37543 -10.28061 -10.12581 -9.37445 -9.04063 -8.47392 -7.96667 -7.92515 -6.04274 -4.04232 3.33561 3.41686 3.45633 3.49863 4.41638 4.48144 5.16670 5.28659 5.46259 5.49206 5.67914 5.73191 5.77874 5.96678 6.03974 6.10135 6.32381 6.45233 6.55920 6.75454 6.87883 6.97499 7.30430 7.36451 7.54116 7.64202 7.92215 8.29667 8.95606 9.16804 9.61512 11.08164 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053917 B = 0.012059 C = 0.010822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.187987 B = 2321.445296 C = 2586.794905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.052 3.948 4 C -0.116 4.116 5 C -0.100 4.100 6 C 0.010 3.990 7 H 0.055 0.945 8 C -0.504 4.504 9 H 0.061 0.939 10 C 0.065 3.935 11 N -0.895 5.895 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.391 3.609 17 O -0.468 6.468 18 C 0.005 3.995 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.021 0.979 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 5.609 3.952 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.253 5.253 3 C -0.076 4.076 4 C -0.154 4.154 5 C -0.138 4.138 6 C -0.009 4.009 7 H 0.072 0.928 8 C -0.542 4.542 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.533 5.533 12 Si 0.727 3.273 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.211 1.211 16 C 0.266 3.734 17 O -0.340 6.340 18 C -0.123 4.123 19 H 0.085 0.915 20 H 0.085 0.915 21 H 0.039 0.961 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.775 5.276 3.701 9.350 hybrid contribution 0.384 -0.200 -1.143 1.222 sum -6.391 5.076 2.558 8.553 Atomic orbital electron populations 1.22453 0.87756 1.02180 0.99774 1.61769 1.06891 1.13981 1.42671 1.21709 0.97352 0.89263 0.99294 1.20552 0.94522 1.00701 0.99612 1.20839 0.96041 0.97580 0.99314 1.19308 0.94397 0.92545 0.94661 0.92756 1.20966 0.94555 0.97851 1.40824 0.92116 1.24948 0.97188 0.96428 0.95076 1.69846 1.31666 1.05789 1.46016 0.86424 0.84032 0.78261 0.78602 1.19686 1.21066 1.21051 1.24673 0.88299 0.68901 0.91553 1.90201 1.80910 1.37319 1.25595 1.23319 0.97241 1.00714 0.91017 0.91463 0.91531 0.96066 0.91868 0.94317 0.90954 0.93285 0.93439 0.91659 0.92851 0.94129 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.43 60.06 0.57 0.93 16 2 N -0.53 -9.24 4.66 -245.28 -1.14 -10.38 16 3 C 0.05 0.87 5.26 -5.44 -0.03 0.84 16 4 C -0.12 -1.97 5.22 -29.81 -0.16 -2.12 16 5 C -0.10 -2.06 4.94 -28.24 -0.14 -2.20 16 6 C 0.01 0.25 2.06 -92.55 -0.19 0.06 16 7 H 0.05 1.45 8.12 -51.93 -0.42 1.03 16 8 C -0.50 -14.30 7.98 -34.44 -0.27 -14.58 16 9 H 0.06 1.70 7.75 -52.49 -0.41 1.29 16 10 C 0.07 1.89 5.07 -17.82 -0.09 1.80 16 11 N -0.89 -26.50 12.37 55.43 0.69 -25.81 16 12 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 C 0.39 9.87 3.76 -29.32 -0.11 9.76 16 17 O -0.47 -13.43 16.62 6.00 0.10 -13.33 16 18 C 0.01 0.11 5.69 -3.95 -0.02 0.08 16 19 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 20 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 21 H 0.02 0.27 8.00 -51.93 -0.42 -0.14 16 22 H 0.06 0.86 7.46 -51.93 -0.39 0.47 16 23 H 0.04 0.71 6.92 -51.93 -0.36 0.35 16 24 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 25 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.04 0.81 7.85 -51.93 -0.41 0.40 16 30 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 244.84 15.07 3.69 3.69 Total: -1.00 -31.31 244.84 -6.60 -37.92 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -4.47 Total: -4.01 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.45 Total: -5.43 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.46 Total: -36.19 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.10 Total: -13.33 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.31 -6.60 -37.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.501 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds