Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.44736 * 110.97861 * 2 1 4 4 C 1.52102 * 109.40105 * 141.54265 * 3 2 1 5 5 C 1.47576 * 114.67011 * 88.54444 * 4 3 2 6 6 C 1.55092 * 109.45645 * 297.10620 * 5 4 3 7 7 H 1.09003 * 109.46753 * 308.01666 * 6 5 4 8 8 C 1.50702 * 109.46652 * 188.02614 * 6 5 4 9 9 H 1.08001 * 120.00190 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99520 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00346 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99654 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47183 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47273 * 120.00073 * 12 10 8 15 15 H 1.48504 * 109.47118 * 239.99854 * 12 10 8 16 16 C 1.49169 * 109.48773 * 68.02271 * 6 5 4 17 17 O 1.20762 * 118.62486 * 92.53976 * 16 6 5 18 18 C 1.47963 * 110.99901 * 236.37989 * 2 1 3 19 19 H 1.08997 * 109.47091 * 187.57060 * 1 2 3 20 20 H 1.08994 * 109.47138 * 307.57279 * 1 2 3 21 21 H 1.09001 * 109.47214 * 67.57250 * 1 2 3 22 22 H 1.08996 * 109.48264 * 21.56571 * 3 2 1 23 23 H 1.09002 * 109.48513 * 261.52456 * 3 2 1 24 24 H 1.08994 * 108.44532 * 327.19904 * 4 3 2 25 25 H 1.09009 * 108.44360 * 209.88994 * 4 3 2 26 26 H 1.08994 * 109.47090 * 57.10317 * 5 4 3 27 27 H 1.09003 * 109.47427 * 177.10621 * 5 4 3 28 28 H 0.97004 * 119.99876 * 179.97438 * 11 10 8 29 29 H 1.09003 * 108.96868 * 43.33376 * 18 2 1 30 30 H 1.08993 * 108.97185 * 284.64436 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9872 1.3514 0.0000 4 6 3.2170 1.4210 0.8923 5 6 4.4904 1.1175 0.2108 6 6 4.4647 -0.3452 -0.3044 7 1 4.1911 -1.0132 0.5122 8 6 5.8294 -0.7189 -0.8232 9 1 6.6341 0.0009 -0.7938 10 6 6.0506 -1.9797 -1.3355 11 7 5.0706 -2.8560 -1.3718 12 14 7.7419 -2.4427 -1.9793 13 1 8.6624 -1.2873 -1.8283 14 1 8.2662 -3.5980 -1.2074 15 1 7.6416 -2.8109 -3.4144 16 6 3.4641 -0.4680 -1.4039 17 8 3.8364 -0.3246 -2.5437 18 6 1.9992 -0.7648 -1.1503 19 1 -0.3633 -1.0187 0.1354 20 1 -0.3633 0.6266 0.8145 21 1 -0.3634 0.3921 -0.9499 22 1 1.2251 2.0330 0.3777 23 1 2.2588 1.6367 -1.0164 24 1 3.0882 0.7151 1.7127 25 1 3.2817 2.4246 1.3129 26 1 4.6230 1.7970 -0.6309 27 1 5.3161 1.2415 0.9115 28 1 5.2262 -3.7429 -1.7326 29 1 1.4262 -0.5077 -2.0412 30 1 1.8829 -1.8301 -0.9514 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259687103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = -58.149549 kcal Electronic energy + Delta-G solvation = -13196.609306 eV Core-core repulsion = 10990.905262 eV Total energy + Delta-G solvation = -2205.704044 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.86439 -38.14881 -35.87192 -34.24964 -31.07076 -29.19087 -27.28230 -24.95199 -24.09688 -21.21441 -19.96906 -18.37222 -17.37767 -16.93161 -16.38886 -15.95755 -15.02205 -14.92965 -14.79151 -14.44677 -14.19982 -13.54282 -13.14669 -13.02728 -12.92095 -12.74457 -12.40542 -12.12783 -11.80615 -11.69675 -11.32956 -10.90924 -10.64327 -9.94458 -9.30356 -8.22936 -6.28736 1.34587 1.38509 1.49209 1.55891 2.40324 3.01936 3.10568 3.62997 3.99934 4.15977 4.22662 4.37718 4.45604 4.58773 4.72844 4.78541 4.91728 5.00544 5.05307 5.18632 5.25715 5.37058 5.50071 5.67853 5.76546 5.94031 6.17065 6.28190 6.77461 7.19117 7.40319 8.88775 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053917 B = 0.012059 C = 0.010822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.187987 B = 2321.445296 C = 2586.794905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.050 3.950 4 C -0.114 4.114 5 C -0.091 4.091 6 C 0.000 4.000 7 H 0.036 0.964 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.013 3.987 11 N -0.922 5.922 12 Si 0.957 3.043 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.289 1.289 16 C 0.389 3.611 17 O -0.514 6.514 18 C 0.018 3.982 19 H 0.072 0.928 20 H 0.096 0.904 21 H 0.028 0.972 22 H 0.105 0.895 23 H 0.018 0.982 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.047 0.953 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 6.621 4.941 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.129 4.129 6 C -0.019 4.019 7 H 0.054 0.946 8 C -0.562 4.562 9 H 0.074 0.926 10 C -0.186 4.186 11 N -0.562 5.562 12 Si 0.783 3.217 13 H -0.188 1.188 14 H -0.197 1.197 15 H -0.215 1.215 16 C 0.267 3.733 17 O -0.390 6.390 18 C -0.111 4.111 19 H 0.091 0.909 20 H 0.114 0.886 21 H 0.047 0.953 22 H 0.123 0.877 23 H 0.036 0.964 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.590 6.299 4.724 10.936 hybrid contribution 0.614 -0.488 -1.410 1.613 sum -6.977 5.810 3.314 9.665 Atomic orbital electron populations 1.22595 0.84906 1.03440 1.01358 1.61795 1.09450 1.14350 1.40523 1.21815 0.98311 0.89401 0.98260 1.20516 0.92750 1.02767 0.99139 1.20794 0.98753 0.94078 0.99291 1.19362 0.93242 0.95190 0.94100 0.94616 1.21373 0.96068 0.97985 1.40789 0.92572 1.25755 1.00776 0.96612 0.95449 1.69943 1.33358 1.06014 1.46883 0.85512 0.80104 0.78496 0.77622 1.18780 1.19694 1.21535 1.25045 0.90482 0.67140 0.90603 1.90171 1.82176 1.39670 1.26952 1.23019 0.94337 1.00794 0.92926 0.90927 0.88560 0.95298 0.87717 0.96361 0.91143 0.89535 0.94307 0.91058 0.92903 0.93497 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.43 127.69 1.20 1.78 16 2 N -0.53 -17.56 4.66 -929.93 -4.34 -21.90 16 3 C 0.05 1.52 5.26 86.41 0.45 1.97 16 4 C -0.11 -3.57 5.22 28.60 0.15 -3.42 16 5 C -0.09 -3.69 4.94 29.61 0.15 -3.55 16 6 C 0.00 0.00 2.06 -12.04 -0.02 -0.02 16 7 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 8 C -0.52 -30.26 7.98 25.60 0.20 -30.06 16 9 H 0.06 3.19 7.75 -2.91 -0.02 3.16 16 10 C 0.01 0.75 5.07 84.65 0.43 1.18 16 11 N -0.92 -55.69 12.37 21.45 0.27 -55.43 16 12 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 13 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 16 C 0.39 19.95 3.76 28.91 0.11 20.06 16 17 O -0.51 -30.26 16.62 -1.46 -0.02 -30.29 16 18 C 0.02 0.73 5.69 85.64 0.49 1.21 16 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.10 1.74 7.85 -2.39 -0.02 1.73 16 21 H 0.03 0.65 8.00 -2.39 -0.02 0.63 16 22 H 0.10 2.32 7.46 -2.39 -0.02 2.31 16 23 H 0.02 0.63 6.92 -2.39 -0.02 0.61 16 24 H 0.07 2.27 7.99 -2.39 -0.02 2.25 16 25 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.05 1.85 7.85 -2.39 -0.02 1.84 16 30 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 Total: -1.00 -68.43 244.84 2.19 -66.24 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.10 Total: 3.88 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 3.16 Total: -10.84 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -4.07 Total: -77.32 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.02 Total: -30.29 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -68.43 2.19 -66.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.088 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds