Wall clock time and date at job start Mon Mar 30 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.44803 * 110.99982 * 2 1 4 4 C 1.52111 * 109.40308 * 218.46350 * 3 2 1 5 5 C 1.47572 * 114.66273 * 271.45665 * 4 3 2 6 6 C 1.55095 * 109.45792 * 62.89241 * 5 4 3 7 7 H 1.09002 * 109.46846 * 51.98150 * 6 5 4 8 8 C 1.50699 * 109.46793 * 171.97580 * 6 5 4 9 9 H 1.07998 * 120.00238 * 359.97438 * 8 6 5 10 10 C 1.37886 * 119.99979 * 180.02562 * 8 6 5 11 11 N 1.31518 * 119.99656 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 120.00112 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46748 * 60.00324 * 12 10 8 14 14 H 1.48500 * 109.47211 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47231 * 300.00443 * 12 10 8 16 16 C 1.49180 * 109.48644 * 291.97797 * 6 5 4 17 17 O 1.20765 * 118.62389 * 267.44073 * 16 6 5 18 18 C 1.47964 * 110.99973 * 123.62681 * 2 1 3 19 19 H 1.09012 * 109.46944 * 60.00306 * 1 2 3 20 20 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47591 * 300.00791 * 1 2 3 22 22 H 1.08996 * 109.48801 * 98.48018 * 3 2 1 23 23 H 1.09001 * 109.49159 * 338.44147 * 3 2 1 24 24 H 1.08994 * 108.44512 * 150.11660 * 4 3 2 25 25 H 1.08993 * 108.31812 * 32.70429 * 4 3 2 26 26 H 1.08998 * 109.47509 * 302.89380 * 5 4 3 27 27 H 1.09000 * 109.47354 * 182.88832 * 5 4 3 28 28 H 0.96999 * 119.99679 * 180.02562 * 11 10 8 29 29 H 1.09000 * 108.96453 * 316.67023 * 18 2 1 30 30 H 1.09001 * 108.96498 * 75.44055 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9879 1.3519 0.0000 4 6 3.2178 1.4210 -0.8924 5 6 4.4909 1.1170 -0.2110 6 6 4.4647 -0.3456 0.3042 7 1 4.1908 -1.0136 -0.5124 8 6 5.8292 -0.7199 0.8231 9 1 6.6343 -0.0007 0.7930 10 6 6.0500 -1.9809 1.3354 11 7 5.0696 -2.8568 1.3716 12 14 7.7414 -2.4450 1.9779 13 1 8.1150 -1.5353 3.0906 14 1 7.7164 -3.8454 2.4713 15 1 8.7374 -2.3230 0.8832 16 6 3.4639 -0.4681 1.4037 17 8 3.8364 -0.3252 2.5436 18 6 1.9992 -0.7650 1.1502 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8898 22 1 2.2597 1.6370 1.0163 23 1 1.2261 2.0339 -0.3776 24 1 3.2828 2.4245 -1.3129 25 1 3.0872 0.7134 -1.7110 26 1 4.6238 1.7965 0.6309 27 1 5.3167 1.2407 -0.9117 28 1 5.2248 -3.7437 1.7323 29 1 1.4261 -0.5079 2.0410 30 1 1.8843 -1.8303 0.9504 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259687105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:45 Heat of formation + Delta-G solvation = -58.222847 kcal Electronic energy + Delta-G solvation = -13196.403084 eV Core-core repulsion = 10990.695861 eV Total energy + Delta-G solvation = -2205.707222 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86054 -38.14263 -35.86931 -34.24778 -31.06846 -29.18977 -27.28002 -24.94623 -24.09290 -21.21409 -19.96709 -18.36654 -17.37545 -16.92494 -16.39230 -15.94522 -15.03013 -14.92285 -14.78620 -14.43688 -14.20245 -13.53769 -13.14850 -13.01595 -12.93997 -12.71997 -12.42123 -12.13410 -11.81623 -11.70115 -11.33284 -10.91511 -10.63008 -9.94231 -9.29966 -8.22426 -6.28385 1.35540 1.40598 1.46504 1.56183 2.40712 3.02060 3.10849 3.63284 4.00083 4.15516 4.23283 4.37769 4.45578 4.57572 4.73059 4.78604 4.91767 5.00915 5.05250 5.18659 5.25762 5.37038 5.49940 5.67851 5.76537 5.94138 6.17168 6.27982 6.77313 7.19363 7.40466 8.88912 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053905 B = 0.012059 C = 0.010822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.303442 B = 2321.351588 C = 2586.797162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.050 3.950 4 C -0.114 4.114 5 C -0.092 4.092 6 C 0.001 3.999 7 H 0.036 0.964 8 C -0.527 4.527 9 H 0.056 0.944 10 C 0.014 3.986 11 N -0.922 5.922 12 Si 0.957 3.043 13 H -0.280 1.280 14 H -0.283 1.283 15 H -0.260 1.260 16 C 0.389 3.611 17 O -0.514 6.514 18 C 0.017 3.983 19 H 0.096 0.904 20 H 0.071 0.929 21 H 0.030 0.970 22 H 0.018 0.982 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.047 0.953 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 6.544 -4.932 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.129 4.129 6 C -0.018 4.018 7 H 0.054 0.946 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.185 4.185 11 N -0.562 5.562 12 Si 0.782 3.218 13 H -0.206 1.206 14 H -0.208 1.208 15 H -0.185 1.185 16 C 0.267 3.733 17 O -0.390 6.390 18 C -0.111 4.111 19 H 0.114 0.886 20 H 0.090 0.910 21 H 0.048 0.952 22 H 0.036 0.964 23 H 0.122 0.878 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.584 6.211 -4.714 10.877 hybrid contribution 0.624 -0.455 1.408 1.605 sum -6.960 5.757 -3.306 9.618 Atomic orbital electron populations 1.22576 0.84927 1.02952 1.01819 1.61819 1.09444 1.14354 1.40523 1.21815 0.98288 0.89405 0.98261 1.20517 0.92737 1.02754 0.99155 1.20795 0.98757 0.94089 0.99287 1.19353 0.93216 0.95172 0.94085 0.94628 1.21319 0.96085 0.98040 1.41014 0.92575 1.25755 1.00785 0.96586 0.95415 1.69931 1.33442 1.06014 1.46768 0.85626 0.80295 0.76957 0.78920 1.20553 1.20813 1.18477 1.25052 0.90497 0.67134 0.90607 1.90172 1.82188 1.39669 1.26955 1.23013 0.94320 1.00772 0.92992 0.88590 0.91028 0.95171 0.96350 0.87763 0.89520 0.91128 0.94316 0.91047 0.92885 0.93500 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.25 127.69 1.18 1.76 16 2 N -0.54 -17.58 4.66 -929.75 -4.33 -21.91 16 3 C 0.05 1.53 5.26 86.40 0.45 1.98 16 4 C -0.11 -3.57 5.23 28.60 0.15 -3.42 16 5 C -0.09 -3.70 4.94 29.61 0.15 -3.55 16 6 C 0.00 0.04 2.06 -12.04 -0.02 0.02 16 7 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16 8 C -0.53 -30.42 7.98 25.60 0.20 -30.21 16 9 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 10 C 0.01 0.79 5.06 84.66 0.43 1.22 16 11 N -0.92 -55.69 12.37 21.45 0.27 -55.42 16 12 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 15 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 16 C 0.39 19.95 3.75 28.91 0.11 20.06 16 17 O -0.51 -30.30 16.62 -1.47 -0.02 -30.32 16 18 C 0.02 0.72 5.69 85.63 0.49 1.20 16 19 H 0.10 1.76 8.06 -2.38 -0.02 1.74 16 20 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.02 0.63 6.92 -2.39 -0.02 0.62 16 23 H 0.10 2.33 7.59 -2.39 -0.02 2.31 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 2.28 7.98 -2.39 -0.02 2.26 16 26 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.05 1.85 7.95 -2.39 -0.02 1.83 16 30 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 Total: -1.00 -68.35 245.23 2.17 -66.18 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.10 Total: 4.15 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 3.13 Total: -10.95 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -4.07 Total: -77.33 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.02 Total: -30.32 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -68.35 2.17 -66.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.956 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds