Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.49416 * 2 1 4 4 C 1.53297 * 109.48181 * 239.96167 * 2 1 3 5 5 H 1.08997 * 109.71141 * 305.91910 * 4 2 1 6 6 C 1.50698 * 109.70574 * 66.54363 * 4 2 1 7 7 H 1.08001 * 120.00454 * 358.78420 * 6 4 2 8 8 C 1.37883 * 119.99926 * 178.78410 * 6 4 2 9 9 N 1.31515 * 119.99778 * 0.02562 * 8 6 4 10 10 Si 1.86801 * 120.00206 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46954 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47082 * 119.99866 * 10 8 6 13 13 H 1.48493 * 109.47222 * 240.00442 * 10 8 6 14 14 C 1.51433 * 108.24305 * 186.22688 * 4 2 1 15 15 O 1.20761 * 121.11599 * 229.00838 * 14 4 2 16 16 C 1.51442 * 117.77599 * 49.02961 * 14 4 2 17 17 C 1.53300 * 108.24138 * 310.97498 * 16 14 4 18 18 N 1.46822 * 109.40004 * 53.79001 * 17 16 14 19 19 C 1.46901 * 110.99458 * 170.24730 * 18 17 16 20 20 H 1.09004 * 109.46794 * 304.82099 * 1 2 3 21 21 H 1.08997 * 109.46804 * 64.81812 * 1 2 3 22 22 H 1.08997 * 109.47196 * 184.81912 * 1 2 3 23 23 H 0.97001 * 119.99552 * 179.97438 * 9 8 6 24 24 H 1.08998 * 109.70459 * 191.28268 * 16 14 4 25 25 H 1.09003 * 109.73924 * 70.68254 * 16 14 4 26 26 H 1.09001 * 109.47669 * 293.80805 * 17 16 14 27 27 H 1.09001 * 109.47560 * 173.77306 * 17 16 14 28 28 H 1.08998 * 109.47614 * 66.66995 * 19 18 17 29 29 H 1.09003 * 109.46968 * 186.66309 * 19 18 17 30 30 H 1.09000 * 109.47237 * 306.66544 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2511 5 1 1.5964 -1.7168 -1.3089 6 6 1.6784 0.0692 -2.4803 7 1 1.1192 0.9882 -2.3848 8 6 2.0602 -0.3790 -3.7272 9 7 2.7406 -1.4984 -3.8436 10 14 1.6097 0.6031 -5.2510 11 1 0.8483 1.8141 -4.8523 12 1 2.8485 1.0097 -5.9620 13 1 0.7748 -0.2333 -6.1501 14 6 3.5473 -0.8435 -1.1471 15 8 4.2635 -0.5265 -2.0663 16 6 4.1252 -1.3749 0.1479 17 6 3.4814 -0.6101 1.3101 18 7 2.0197 -0.6929 1.1983 19 6 1.3690 -0.1746 2.4090 20 1 -0.3633 0.5868 0.8437 21 1 -0.3633 0.4373 -0.9300 22 1 -0.3633 -1.0240 0.0863 23 1 3.0088 -1.8138 -4.7208 24 1 5.2042 -1.2210 0.1594 25 1 3.9045 -2.4383 0.2406 26 1 3.7903 0.4346 1.2732 27 1 3.7993 -1.0502 2.2553 28 1 1.5530 0.8967 2.4902 29 1 0.2957 -0.3554 2.3504 30 1 1.7754 -0.6804 3.2848 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259699938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = -31.749851 kcal Electronic energy + Delta-G solvation = -13242.722048 eV Core-core repulsion = 11038.162781 eV Total energy + Delta-G solvation = -2204.559267 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91222 -36.50444 -33.14414 -31.45113 -30.64278 -26.85122 -25.28116 -24.21024 -21.61776 -19.88465 -17.99254 -16.45806 -15.19078 -14.75820 -14.50938 -14.17543 -13.83912 -13.38080 -12.94090 -12.42191 -11.93785 -11.73013 -11.49061 -11.45961 -10.99565 -10.88827 -10.60366 -10.53900 -10.37390 -10.25806 -9.42842 -9.14880 -8.32653 -7.78439 -7.75255 -5.95023 -3.97655 3.36227 3.44093 3.46334 3.68136 4.39658 4.56089 5.24189 5.46548 5.58757 5.60362 5.74764 5.82365 5.91486 6.00412 6.10585 6.15103 6.20958 6.27497 6.53017 6.59881 6.77769 6.99108 7.31781 7.44505 7.61980 7.72902 7.98504 8.33309 8.97090 9.34588 9.68073 11.16689 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045069 B = 0.013682 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.126929 B = 2045.952389 C = 2501.955766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.095 3.905 3 H 0.032 0.968 4 C 0.021 3.979 5 H 0.063 0.937 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.081 3.919 9 N -0.869 5.869 10 Si 0.892 3.108 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.354 3.646 15 O -0.426 6.426 16 C -0.175 4.175 17 C 0.070 3.930 18 N -0.546 5.546 19 C 0.026 3.974 20 H 0.036 0.964 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.259 0.741 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.018 0.982 29 H 0.070 0.930 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 1.239 9.842 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.013 4.013 3 H 0.050 0.950 4 C 0.002 3.998 5 H 0.081 0.919 6 C -0.565 4.565 7 H 0.078 0.922 8 C -0.124 4.124 9 N -0.505 5.505 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.225 3.775 15 O -0.295 6.295 16 C -0.214 4.214 17 C -0.058 4.058 18 N -0.271 5.271 19 C -0.123 4.123 20 H 0.055 0.945 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.451 0.805 9.158 9.307 hybrid contribution 0.121 1.178 -0.642 1.347 sum -1.330 1.983 8.516 8.845 Atomic orbital electron populations 1.21822 0.94718 1.01520 1.01141 1.21743 0.95274 0.95045 0.89194 0.94981 1.19411 0.90448 0.98258 0.91675 0.91937 1.20767 1.37189 1.08650 0.89892 0.92246 1.24855 0.93963 0.94727 0.98896 1.69935 1.36093 1.20849 1.23598 0.86541 0.77994 0.80177 0.83235 1.19825 1.21069 1.21124 1.25310 0.93685 0.73414 0.85122 1.90238 1.63493 1.36473 1.39317 1.22552 0.99814 1.01972 0.97022 1.21896 0.87882 0.98114 0.97892 1.61901 1.04925 1.57383 1.02851 1.22351 1.00292 0.97050 0.92576 0.94456 0.90977 0.92438 0.93115 0.91072 0.89265 0.95341 0.91199 0.96381 0.91136 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.33 37.16 0.31 -2.12 16 2 C 0.09 1.94 1.93 -67.60 -0.13 1.81 16 3 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 4 C 0.02 0.53 2.01 -92.41 -0.19 0.34 16 5 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 6 C -0.53 -14.61 7.61 -34.44 -0.26 -14.87 16 7 H 0.06 1.61 7.16 -52.49 -0.38 1.23 16 8 C 0.08 2.32 4.75 -17.82 -0.08 2.23 16 9 N -0.87 -26.17 11.32 55.43 0.63 -25.54 16 10 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.35 8.89 6.20 -28.31 -0.18 8.71 16 15 O -0.43 -12.39 14.82 6.00 0.09 -12.30 16 16 C -0.17 -3.40 6.35 -27.36 -0.17 -3.57 16 17 C 0.07 1.19 5.50 -3.71 -0.02 1.17 16 18 N -0.55 -9.66 4.69 -234.62 -1.10 -10.76 16 19 C 0.03 0.36 8.87 60.07 0.53 0.89 16 20 H 0.04 0.57 6.67 -51.93 -0.35 0.22 16 21 H 0.07 1.39 6.94 -51.93 -0.36 1.03 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 26 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.93 6.43 -51.93 -0.33 0.60 16 30 H 0.06 0.71 8.00 -51.93 -0.42 0.29 16 LS Contribution 241.66 15.07 3.64 3.64 Total: -1.00 -31.24 241.66 -6.29 -37.53 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -4.34 Total: -4.29 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.19 Total: -5.41 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.47 Total: -36.31 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.24 -6.29 -37.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.781 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds