Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.49416 * 2 1 4 4 C 1.53297 * 109.48181 * 239.96167 * 2 1 3 5 5 H 1.08997 * 109.71141 * 305.91910 * 4 2 1 6 6 C 1.50698 * 109.70574 * 66.54363 * 4 2 1 7 7 H 1.08001 * 120.00454 * 358.78420 * 6 4 2 8 8 C 1.37883 * 119.99926 * 178.78410 * 6 4 2 9 9 N 1.31515 * 119.99778 * 0.02562 * 8 6 4 10 10 Si 1.86801 * 120.00206 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46954 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47082 * 119.99866 * 10 8 6 13 13 H 1.48493 * 109.47222 * 240.00442 * 10 8 6 14 14 C 1.51433 * 108.24305 * 186.22688 * 4 2 1 15 15 O 1.20761 * 121.11599 * 229.00838 * 14 4 2 16 16 C 1.51442 * 117.77599 * 49.02961 * 14 4 2 17 17 C 1.53300 * 108.24138 * 310.97498 * 16 14 4 18 18 N 1.46822 * 109.40004 * 53.79001 * 17 16 14 19 19 C 1.46901 * 110.99458 * 170.24730 * 18 17 16 20 20 H 1.09004 * 109.46794 * 304.82099 * 1 2 3 21 21 H 1.08997 * 109.46804 * 64.81812 * 1 2 3 22 22 H 1.08997 * 109.47196 * 184.81912 * 1 2 3 23 23 H 0.97001 * 119.99552 * 179.97438 * 9 8 6 24 24 H 1.08998 * 109.70459 * 191.28268 * 16 14 4 25 25 H 1.09003 * 109.73924 * 70.68254 * 16 14 4 26 26 H 1.09001 * 109.47669 * 293.80805 * 17 16 14 27 27 H 1.09001 * 109.47560 * 173.77306 * 17 16 14 28 28 H 1.08998 * 109.47614 * 66.66995 * 19 18 17 29 29 H 1.09003 * 109.46968 * 186.66309 * 19 18 17 30 30 H 1.09000 * 109.47237 * 306.66544 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2511 5 1 1.5964 -1.7168 -1.3089 6 6 1.6784 0.0692 -2.4803 7 1 1.1192 0.9882 -2.3848 8 6 2.0602 -0.3790 -3.7272 9 7 2.7406 -1.4984 -3.8436 10 14 1.6097 0.6031 -5.2510 11 1 0.8483 1.8141 -4.8523 12 1 2.8485 1.0097 -5.9620 13 1 0.7748 -0.2333 -6.1501 14 6 3.5473 -0.8435 -1.1471 15 8 4.2635 -0.5265 -2.0663 16 6 4.1252 -1.3749 0.1479 17 6 3.4814 -0.6101 1.3101 18 7 2.0197 -0.6929 1.1983 19 6 1.3690 -0.1746 2.4090 20 1 -0.3633 0.5868 0.8437 21 1 -0.3633 0.4373 -0.9300 22 1 -0.3633 -1.0240 0.0863 23 1 3.0088 -1.8138 -4.7208 24 1 5.2042 -1.2210 0.1594 25 1 3.9045 -2.4383 0.2406 26 1 3.7903 0.4346 1.2732 27 1 3.7993 -1.0502 2.2553 28 1 1.5530 0.8967 2.4902 29 1 0.2957 -0.3554 2.3504 30 1 1.7754 -0.6804 3.2848 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259699938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = -53.713844 kcal Electronic energy + Delta-G solvation = -13243.674478 eV Core-core repulsion = 11038.162781 eV Total energy + Delta-G solvation = -2205.511697 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63216 -38.27619 -35.10807 -33.13914 -32.33693 -28.59991 -26.67522 -26.03503 -23.26530 -21.49397 -19.78550 -18.51943 -16.92490 -16.32578 -16.21590 -16.03670 -15.39237 -15.19774 -14.61421 -14.12246 -13.47333 -13.30080 -13.12889 -13.01259 -12.82043 -12.58009 -12.31200 -12.16411 -12.10807 -11.86894 -11.35648 -11.06247 -10.51299 -9.68611 -9.16083 -8.12756 -6.19723 1.37118 1.40006 1.49986 1.73605 2.43064 3.08196 3.21834 3.77924 4.15480 4.20245 4.25816 4.42435 4.51194 4.66533 4.75429 4.78637 4.84846 5.02677 5.06384 5.14378 5.21040 5.42977 5.44253 5.64089 5.77611 6.09357 6.30038 6.36029 6.82314 7.39883 7.49199 8.98652 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045069 B = 0.013682 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.126929 B = 2045.952389 C = 2501.955766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.104 3.896 3 H 0.018 0.982 4 C 0.011 3.989 5 H 0.037 0.963 6 C -0.536 4.536 7 H 0.059 0.941 8 C 0.025 3.975 9 N -0.903 5.903 10 Si 0.951 3.049 11 H -0.261 1.261 12 H -0.292 1.292 13 H -0.275 1.275 14 C 0.341 3.659 15 O -0.477 6.477 16 C -0.165 4.165 17 C 0.073 3.927 18 N -0.554 5.554 19 C 0.024 3.976 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.255 0.745 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.027 0.973 27 H 0.113 0.887 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.396 1.706 11.882 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.004 4.004 3 H 0.036 0.964 4 C -0.008 4.008 5 H 0.055 0.945 6 C -0.574 4.574 7 H 0.077 0.923 8 C -0.176 4.176 9 N -0.541 5.541 10 Si 0.777 3.223 11 H -0.185 1.185 12 H -0.218 1.218 13 H -0.201 1.201 14 C 0.216 3.784 15 O -0.351 6.351 16 C -0.203 4.203 17 C -0.055 4.055 18 N -0.279 5.279 19 C -0.123 4.123 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.045 0.955 27 H 0.131 0.869 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.068 1.277 11.237 11.497 hybrid contribution 0.290 1.018 -1.206 1.605 sum -1.778 2.295 10.031 10.443 Atomic orbital electron populations 1.21744 0.93053 1.02056 1.01633 1.21489 0.96580 0.93598 0.88774 0.96400 1.19410 0.91081 0.96999 0.93322 0.94497 1.21167 1.36373 1.08618 0.91291 0.92326 1.25667 0.94155 0.95730 1.02022 1.70064 1.37700 1.22529 1.23792 0.85613 0.77505 0.79344 0.79807 1.18494 1.21834 1.20104 1.25917 0.93797 0.72088 0.86552 1.90209 1.64363 1.38900 1.41589 1.22458 1.00674 1.02546 0.94621 1.21985 0.87282 0.97927 0.98299 1.61840 1.05614 1.57317 1.03174 1.22472 1.00672 0.97671 0.91474 0.91047 0.92865 0.92345 0.93582 0.89682 0.88219 0.95498 0.86940 0.95770 0.90297 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.33 71.98 0.60 -3.80 16 2 C 0.10 4.13 1.93 45.03 0.09 4.22 16 3 H 0.02 0.76 8.10 -2.38 -0.02 0.74 16 4 C 0.01 0.57 2.01 -11.95 -0.02 0.54 16 5 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 6 C -0.54 -30.34 7.61 25.60 0.19 -30.14 16 7 H 0.06 3.22 7.16 -2.91 -0.02 3.20 16 8 C 0.03 1.49 4.75 84.66 0.40 1.89 16 9 N -0.90 -56.13 11.32 21.45 0.24 -55.89 16 10 Si 0.95 46.28 29.54 68.60 2.03 48.30 16 11 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 14 C 0.34 17.37 6.20 29.57 0.18 17.55 16 15 O -0.48 -28.58 14.82 -1.45 -0.02 -28.60 16 16 C -0.16 -6.13 6.35 30.18 0.19 -5.94 16 17 C 0.07 2.22 5.50 86.42 0.48 2.70 16 18 N -0.55 -18.01 4.69 -896.22 -4.20 -22.21 16 19 C 0.02 0.58 8.87 127.69 1.13 1.71 16 20 H 0.07 1.96 6.67 -2.38 -0.02 1.94 16 21 H 0.05 2.01 6.94 -2.39 -0.02 2.00 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 25 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 26 H 0.03 0.84 8.10 -2.39 -0.02 0.82 16 27 H 0.11 2.54 7.98 -2.39 -0.02 2.52 16 28 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 1.74 6.43 -2.39 -0.02 1.73 16 30 H 0.09 1.61 8.00 -2.39 -0.02 1.59 16 Total: -1.00 -69.24 241.66 2.39 -66.85 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.11 Total: 2.83 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 3.24 Total: -11.28 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.96 Total: -78.10 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.02 Total: -28.60 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -69.24 2.39 -66.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.137 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds