Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.48707 * 2 1 4 4 C 1.53303 * 109.47964 * 239.97091 * 2 1 3 5 5 H 1.08997 * 109.71301 * 66.48352 * 4 2 1 6 6 C 1.50699 * 109.70701 * 305.90109 * 4 2 1 7 7 H 1.07999 * 120.00803 * 0.02562 * 6 4 2 8 8 C 1.37881 * 119.99889 * 180.02562 * 6 4 2 9 9 N 1.31520 * 120.00186 * 180.02562 * 8 6 4 10 10 Si 1.86798 * 120.00030 * 0.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 89.99863 * 10 8 6 12 12 H 1.48503 * 109.47261 * 330.00044 * 10 8 6 13 13 H 1.48500 * 109.47454 * 210.00037 * 10 8 6 14 14 C 1.51442 * 108.24172 * 186.21786 * 4 2 1 15 15 O 1.20760 * 121.10664 * 229.00542 * 14 4 2 16 16 C 1.51432 * 117.77732 * 49.02520 * 14 4 2 17 17 C 1.53299 * 108.24608 * 310.97510 * 16 14 4 18 18 N 1.46823 * 109.49336 * 120.03954 * 2 1 3 19 19 C 1.46896 * 110.99987 * 309.73141 * 18 2 1 20 20 H 1.09001 * 109.47210 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46504 * 300.03019 * 1 2 3 22 22 H 1.08995 * 109.46687 * 60.02876 * 1 2 3 23 23 H 0.96998 * 120.00124 * 180.02562 * 9 8 6 24 24 H 1.08997 * 109.71280 * 191.28608 * 16 14 4 25 25 H 1.08998 * 109.74684 * 70.67895 * 16 14 4 26 26 H 1.09002 * 109.48279 * 293.82008 * 17 16 14 27 27 H 1.08997 * 109.49063 * 173.77068 * 17 16 14 28 28 H 1.09007 * 109.47081 * 60.00395 * 19 18 2 29 29 H 1.09002 * 109.47108 * 180.02562 * 19 18 2 30 30 H 1.08993 * 109.47445 * 300.00300 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2513 5 1 1.7779 -0.1505 -2.1404 6 6 1.4265 -2.0968 -1.3311 7 1 0.7378 -2.4256 -0.5669 8 6 1.7431 -2.9339 -2.3800 9 7 1.2061 -4.1325 -2.4500 10 14 2.9347 -2.3657 -3.7016 11 1 4.3190 -2.7370 -3.3127 12 1 2.8413 -0.8913 -3.8516 13 1 2.5912 -3.0172 -4.9911 14 6 3.5474 -0.8432 -1.1474 15 8 4.2634 -0.5260 -2.0667 16 6 4.1254 -1.3745 0.1475 17 6 3.4817 -0.6099 1.3098 18 7 2.0200 -0.6929 1.1982 19 6 1.3694 -0.1747 2.4089 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3632 0.5143 0.8897 22 1 -0.3632 0.5134 -0.8902 23 1 1.4292 -4.7215 -3.1877 24 1 5.2044 -1.2205 0.1589 25 1 3.9050 -2.4379 0.2402 26 1 3.7903 0.4349 1.2729 27 1 3.7997 -1.0499 2.2550 28 1 0.2921 -0.3241 2.3348 29 1 1.7508 -0.7049 3.2816 30 1 1.5825 0.8895 2.5089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259699942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = -26.853625 kcal Electronic energy + Delta-G solvation = -13407.819229 eV Core-core repulsion = 11203.472278 eV Total energy + Delta-G solvation = -2204.346951 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40069 -37.06983 -33.21737 -31.81143 -30.92736 -27.26574 -25.44968 -24.01731 -21.99806 -20.02436 -18.40602 -16.64965 -15.41649 -15.25213 -14.60788 -14.34292 -14.20359 -13.37759 -13.04739 -12.79947 -12.33289 -12.19689 -11.71606 -11.35494 -11.20994 -10.93372 -10.84551 -10.59431 -10.41578 -9.76766 -9.63033 -9.24409 -8.70772 -8.25679 -7.71109 -6.11527 -4.11612 2.89383 3.44027 3.49528 3.72038 4.36234 4.45463 5.02046 5.22864 5.48164 5.49547 5.59693 5.68661 5.82863 5.88894 5.94730 6.02740 6.12537 6.17839 6.44318 6.49686 6.60675 6.80375 6.91934 7.05994 7.53681 7.58503 7.71901 8.36595 8.57216 8.98188 9.47162 10.98289 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.016934 C = 0.014261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.585869 B = 1653.085437 C = 1962.862231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.108 3.892 3 H 0.021 0.979 4 C -0.023 4.023 5 H 0.054 0.946 6 C -0.485 4.485 7 H 0.096 0.904 8 C 0.071 3.929 9 N -0.889 5.889 10 Si 0.864 3.136 11 H -0.278 1.278 12 H -0.255 1.255 13 H -0.297 1.297 14 C 0.353 3.647 15 O -0.490 6.490 16 C -0.161 4.161 17 C 0.073 3.927 18 N -0.525 5.525 19 C 0.025 3.975 20 H 0.083 0.917 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.265 0.735 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.025 0.975 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 7.222 7.929 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.000 4.000 3 H 0.038 0.962 4 C -0.043 4.043 5 H 0.072 0.928 6 C -0.523 4.523 7 H 0.114 0.886 8 C -0.132 4.132 9 N -0.527 5.527 10 Si 0.694 3.306 11 H -0.205 1.205 12 H -0.179 1.179 13 H -0.225 1.225 14 C 0.233 3.767 15 O -0.368 6.368 16 C -0.199 4.199 17 C -0.056 4.056 18 N -0.249 5.249 19 C -0.123 4.123 20 H 0.102 0.898 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.456 6.733 7.308 10.043 hybrid contribution 1.019 0.842 -0.665 1.480 sum 2.474 7.574 6.643 10.374 Atomic orbital electron populations 1.21879 0.93988 1.03875 0.99792 1.21468 0.96009 0.92785 0.89752 0.96155 1.20093 0.89540 0.99899 0.94739 0.92799 1.20720 1.26364 0.95492 1.09681 0.88610 1.25066 0.95748 0.94886 0.97529 1.69866 1.43409 1.07511 1.31868 0.87057 0.81424 0.80458 0.81698 1.20455 1.17888 1.22466 1.25860 0.93926 0.70342 0.86528 1.90224 1.65036 1.40922 1.40610 1.22251 0.99169 1.03658 0.94856 1.21894 0.88141 0.97470 0.98069 1.61661 1.04367 1.56889 1.02011 1.22397 1.00651 0.96618 0.92629 0.89794 0.94101 0.92688 0.92483 0.90830 0.87179 0.95687 0.90554 0.90797 0.92035 0.96704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.28 37.16 0.31 -2.11 16 2 C 0.11 2.08 2.20 -67.59 -0.15 1.93 16 3 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 4 C -0.02 -0.54 1.78 -92.40 -0.16 -0.70 16 5 H 0.05 1.33 7.17 -51.93 -0.37 0.96 16 6 C -0.49 -12.96 8.06 -34.44 -0.28 -13.24 16 7 H 0.10 2.71 6.57 -52.49 -0.34 2.37 16 8 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 9 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 10 Si 0.86 23.33 24.00 -169.99 -4.08 19.25 16 11 H -0.28 -7.74 7.06 56.52 0.40 -7.34 16 12 H -0.25 -6.90 5.97 56.52 0.34 -6.57 16 13 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 14 C 0.35 8.28 4.60 -28.31 -0.13 8.15 16 15 O -0.49 -12.66 14.29 6.00 0.09 -12.57 16 16 C -0.16 -3.12 6.22 -27.37 -0.17 -3.29 16 17 C 0.07 1.19 5.51 -3.71 -0.02 1.17 16 18 N -0.52 -9.37 4.44 -234.62 -1.04 -10.41 16 19 C 0.03 0.35 8.92 60.06 0.54 0.89 16 20 H 0.08 1.66 6.30 -51.93 -0.33 1.33 16 21 H 0.04 0.59 6.32 -51.93 -0.33 0.26 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.11 2.26 8.14 -51.93 -0.42 1.84 16 26 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 27 H 0.08 1.06 8.01 -51.93 -0.42 0.64 16 28 H 0.07 1.01 6.19 -51.92 -0.32 0.69 16 29 H 0.06 0.76 8.04 -51.93 -0.42 0.35 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 233.53 15.07 3.52 3.52 Total: -1.00 -30.98 233.53 -5.17 -36.15 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -4.26 Total: -4.69 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -0.17 Total: -5.26 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.27 Total: -36.39 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.08 Total: 19.25 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.98 -5.17 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.293 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds