Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46006 * 110.99733 * 2 1 4 4 C 1.47013 * 114.66148 * 144.63289 * 3 2 1 5 5 C 1.54585 * 106.08675 * 58.23735 * 4 3 2 6 6 O 1.20763 * 120.67145 * 114.33112 * 5 4 3 7 7 C 1.48106 * 118.65642 * 294.61043 * 5 4 3 8 8 H 1.08998 * 108.06633 * 325.70243 * 7 5 4 9 9 C 1.50693 * 108.06631 * 209.19073 * 7 5 4 10 10 H 1.08007 * 119.99569 * 240.00148 * 9 7 5 11 11 C 1.37873 * 120.00160 * 60.00077 * 9 7 5 12 12 N 1.31515 * 120.00203 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 120.00056 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46820 * 89.99876 * 13 11 9 15 15 H 1.48498 * 109.47167 * 210.00041 * 13 11 9 16 16 H 1.48501 * 109.47101 * 330.00186 * 13 11 9 17 17 C 1.54292 * 116.71468 * 87.55876 * 7 5 4 18 18 C 1.44303 * 111.00354 * 243.11589 * 2 1 3 19 19 H 1.09001 * 109.46836 * 56.05223 * 1 2 3 20 20 H 1.09006 * 109.46914 * 176.04908 * 1 2 3 21 21 H 1.08995 * 109.47642 * 296.04665 * 1 2 3 22 22 H 1.08998 * 108.44554 * 23.28806 * 3 2 1 23 23 H 1.08994 * 108.31207 * 265.87265 * 3 2 1 24 24 H 1.08993 * 110.12303 * 299.09344 * 4 3 2 25 25 H 1.09000 * 110.22231 * 177.43051 * 4 3 2 26 26 H 0.96997 * 120.00218 * 179.97438 * 12 11 9 27 27 H 1.08993 * 109.50205 * 198.47694 * 17 7 5 28 28 H 1.09005 * 109.31236 * 78.64043 * 17 7 5 29 29 H 1.09003 * 109.44138 * 342.34351 * 18 2 1 30 30 H 1.08995 * 109.43940 * 102.22199 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9922 1.3631 0.0000 4 6 3.2291 1.5454 0.7733 5 6 4.2657 0.5779 0.1576 6 8 5.2464 1.0023 -0.4049 7 6 4.0286 -0.8800 0.2661 8 1 3.5368 -1.0725 1.2196 9 6 5.3676 -1.5709 0.2880 10 1 5.6166 -2.2903 -0.4782 11 6 6.2747 -1.2848 1.2861 12 7 5.9717 -0.4086 2.2188 13 14 7.9344 -2.1419 1.3137 14 1 8.9159 -1.3448 0.5349 15 1 8.4024 -2.2693 2.7172 16 1 7.8040 -3.4927 0.7107 17 6 3.1804 -1.5295 -0.8471 18 6 1.9862 -0.6092 -1.2016 19 1 -0.3633 0.5739 -0.8525 20 1 -0.3633 -1.0253 -0.0708 21 1 -0.3634 0.4512 0.9232 22 1 1.2291 2.0254 0.4088 23 1 2.1844 1.6561 -1.0321 24 1 3.0574 1.2945 1.8200 25 1 3.5791 2.5741 0.6873 26 1 6.6097 -0.2076 2.9212 27 1 2.8051 -2.4933 -0.5032 28 1 3.7992 -1.6768 -1.7323 29 1 1.2019 -1.1991 -1.6758 30 1 2.3194 0.1689 -1.8883 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727340.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -26.794841 kcal Electronic energy + Delta-G solvation = -13220.132697 eV Core-core repulsion = 11015.788295 eV Total energy + Delta-G solvation = -2204.344402 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.16349 -36.78575 -33.33470 -31.45197 -31.12187 -27.37149 -24.86107 -23.08065 -22.80521 -19.98943 -17.78166 -16.34983 -15.49218 -15.11270 -14.49109 -14.25484 -13.78865 -13.40768 -13.06302 -12.58551 -12.37075 -11.92031 -11.58792 -11.18257 -10.98980 -10.84420 -10.76249 -10.40829 -10.27230 -9.94168 -9.40103 -9.00410 -8.41515 -7.99553 -7.74590 -5.98875 -3.98646 3.38014 3.44485 3.46258 3.75372 4.37190 4.51919 5.12183 5.33174 5.39799 5.48710 5.62935 5.71602 5.90856 6.02402 6.02952 6.10792 6.17247 6.33336 6.55828 6.70789 6.76495 7.01905 7.39325 7.51243 7.55380 7.78543 7.95910 8.37376 9.01227 9.34284 9.66199 11.12928 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054827 B = 0.011961 C = 0.011048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.578861 B = 2340.424937 C = 2533.874320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.510 5.510 3 C 0.056 3.944 4 C -0.169 4.169 5 C 0.404 3.596 6 O -0.474 6.474 7 C 0.000 4.000 8 H 0.058 0.942 9 C -0.509 4.509 10 H 0.057 0.943 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.078 4.078 18 C 0.031 3.969 19 H 0.020 0.980 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.038 0.962 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 1.401 -3.448 10.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.233 5.233 3 C -0.072 4.072 4 C -0.208 4.208 5 C 0.279 3.721 6 O -0.347 6.347 7 C -0.020 4.020 8 H 0.076 0.924 9 C -0.547 4.547 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.117 4.117 18 C -0.098 4.098 19 H 0.039 0.961 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.111 0.889 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.228 1.420 -3.129 9.846 hybrid contribution 0.583 0.120 -0.367 0.700 sum -8.644 1.539 -3.496 9.450 Atomic orbital electron populations 1.22551 0.88020 1.01613 1.00303 1.62403 1.06975 1.15578 1.38324 1.21000 0.97059 0.89808 0.99320 1.21834 0.96484 1.00178 1.02257 1.24854 0.82336 0.92294 0.72626 1.90160 1.27449 1.80862 1.36269 1.18819 0.96039 0.90400 0.96699 0.92416 1.21099 0.99374 1.23538 1.10642 0.92434 1.24946 0.98529 0.94980 0.95315 1.69835 1.35821 1.33463 1.14212 0.86512 0.84268 0.79746 0.76980 1.20677 1.21328 1.19896 1.21922 0.93752 0.97290 0.98719 1.22708 0.98204 0.98543 0.90310 0.96124 0.91393 0.91520 0.92544 0.94431 0.88926 0.90879 0.92858 0.92139 0.92667 0.92682 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.00 60.06 0.54 0.84 16 2 N -0.51 -8.59 4.34 -248.24 -1.08 -9.67 16 3 C 0.06 0.95 4.83 -7.18 -0.03 0.92 16 4 C -0.17 -3.46 6.32 -28.77 -0.18 -3.64 16 5 C 0.40 10.30 4.48 -28.28 -0.13 10.17 16 6 O -0.47 -13.75 16.83 6.00 0.10 -13.65 16 7 C 0.00 -0.01 1.51 -93.47 -0.14 -0.15 16 8 H 0.06 1.57 8.01 -51.93 -0.42 1.16 16 9 C -0.51 -14.57 7.82 -34.44 -0.27 -14.84 16 10 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 11 C 0.06 1.87 5.07 -17.82 -0.09 1.78 16 12 N -0.89 -26.78 12.32 55.43 0.68 -26.10 16 13 Si 0.90 22.60 29.54 -169.99 -5.02 17.57 16 14 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.08 -1.62 5.76 -25.06 -0.14 -1.76 16 18 C 0.03 0.53 5.37 -4.22 -0.02 0.51 16 19 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 20 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 21 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 22 H 0.06 0.80 7.60 -51.93 -0.39 0.41 16 23 H 0.04 0.63 6.56 -51.93 -0.34 0.29 16 24 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.05 1.15 7.91 -51.93 -0.41 0.74 16 29 H 0.05 0.79 7.53 -51.93 -0.39 0.40 16 30 H 0.04 0.75 6.51 -51.93 -0.34 0.41 16 LS Contribution 243.29 15.07 3.67 3.67 Total: -1.00 -32.01 243.29 -6.47 -38.48 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.36 Total: -4.13 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.47 Total: -6.19 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.39 Total: -35.76 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.10 Total: -13.65 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.01 -6.47 -38.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727340.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.689 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds