Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46006 * 110.99733 * 2 1 4 4 C 1.47013 * 114.66148 * 144.63289 * 3 2 1 5 5 C 1.54585 * 106.08675 * 58.23735 * 4 3 2 6 6 O 1.20763 * 120.67145 * 114.33112 * 5 4 3 7 7 C 1.48106 * 118.65642 * 294.61043 * 5 4 3 8 8 H 1.08998 * 108.06633 * 325.70243 * 7 5 4 9 9 C 1.50693 * 108.06631 * 209.19073 * 7 5 4 10 10 H 1.08007 * 119.99569 * 240.00148 * 9 7 5 11 11 C 1.37873 * 120.00160 * 60.00077 * 9 7 5 12 12 N 1.31515 * 120.00203 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 120.00056 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46820 * 89.99876 * 13 11 9 15 15 H 1.48498 * 109.47167 * 210.00041 * 13 11 9 16 16 H 1.48501 * 109.47101 * 330.00186 * 13 11 9 17 17 C 1.54292 * 116.71468 * 87.55876 * 7 5 4 18 18 C 1.44303 * 111.00354 * 243.11589 * 2 1 3 19 19 H 1.09001 * 109.46836 * 56.05223 * 1 2 3 20 20 H 1.09006 * 109.46914 * 176.04908 * 1 2 3 21 21 H 1.08995 * 109.47642 * 296.04665 * 1 2 3 22 22 H 1.08998 * 108.44554 * 23.28806 * 3 2 1 23 23 H 1.08994 * 108.31207 * 265.87265 * 3 2 1 24 24 H 1.08993 * 110.12303 * 299.09344 * 4 3 2 25 25 H 1.09000 * 110.22231 * 177.43051 * 4 3 2 26 26 H 0.96997 * 120.00218 * 179.97438 * 12 11 9 27 27 H 1.08993 * 109.50205 * 198.47694 * 17 7 5 28 28 H 1.09005 * 109.31236 * 78.64043 * 17 7 5 29 29 H 1.09003 * 109.44138 * 342.34351 * 18 2 1 30 30 H 1.08995 * 109.43940 * 102.22199 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9922 1.3631 0.0000 4 6 3.2291 1.5454 0.7733 5 6 4.2657 0.5779 0.1576 6 8 5.2464 1.0023 -0.4049 7 6 4.0286 -0.8800 0.2661 8 1 3.5368 -1.0725 1.2196 9 6 5.3676 -1.5709 0.2880 10 1 5.6166 -2.2903 -0.4782 11 6 6.2747 -1.2848 1.2861 12 7 5.9717 -0.4086 2.2188 13 14 7.9344 -2.1419 1.3137 14 1 8.9159 -1.3448 0.5349 15 1 8.4024 -2.2693 2.7172 16 1 7.8040 -3.4927 0.7107 17 6 3.1804 -1.5295 -0.8471 18 6 1.9862 -0.6092 -1.2016 19 1 -0.3633 0.5739 -0.8525 20 1 -0.3633 -1.0253 -0.0708 21 1 -0.3634 0.4512 0.9232 22 1 1.2291 2.0254 0.4088 23 1 2.1844 1.6561 -1.0321 24 1 3.0574 1.2945 1.8200 25 1 3.5791 2.5741 0.6873 26 1 6.6097 -0.2076 2.9212 27 1 2.8051 -2.4933 -0.5032 28 1 3.7992 -1.6768 -1.7323 29 1 1.2019 -1.1991 -1.6758 30 1 2.3194 0.1689 -1.8883 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727340.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -49.103402 kcal Electronic energy + Delta-G solvation = -13221.100068 eV Core-core repulsion = 11015.788295 eV Total energy + Delta-G solvation = -2205.311773 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81180 -38.50748 -35.36734 -33.20903 -32.79620 -29.00218 -26.43601 -24.81628 -24.45696 -21.42825 -19.71432 -18.46163 -17.07944 -16.60833 -16.42506 -15.90742 -15.49452 -14.97473 -14.57110 -14.34965 -14.04115 -13.49816 -13.20331 -12.94823 -12.76850 -12.64961 -12.36398 -12.13431 -11.95284 -11.44070 -11.38887 -10.97389 -10.60349 -9.73950 -9.25234 -8.20016 -6.25453 1.34964 1.39153 1.47239 1.77503 2.41569 3.12878 3.14048 3.64791 4.06577 4.22455 4.33859 4.45505 4.56465 4.61144 4.64984 4.80549 4.90648 4.96338 5.00349 5.12535 5.13837 5.28224 5.54968 5.77247 5.80746 6.13790 6.23151 6.33951 6.82481 7.34083 7.43885 8.90694 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054827 B = 0.011961 C = 0.011048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.578861 B = 2340.424937 C = 2533.874320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.057 3.943 4 C -0.157 4.157 5 C 0.396 3.604 6 O -0.521 6.521 7 C -0.003 4.003 8 H 0.035 0.965 9 C -0.530 4.530 10 H 0.052 0.948 11 C 0.011 3.989 12 N -0.922 5.922 13 Si 0.954 3.046 14 H -0.286 1.286 15 H -0.278 1.278 16 H -0.261 1.261 17 C -0.077 4.077 18 C 0.040 3.960 19 H 0.040 0.960 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.261 0.739 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.532 1.334 -3.863 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.071 4.071 4 C -0.195 4.195 5 C 0.274 3.726 6 O -0.398 6.398 7 C -0.022 4.022 8 H 0.053 0.947 9 C -0.568 4.568 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.562 5.562 13 Si 0.780 3.220 14 H -0.213 1.213 15 H -0.203 1.203 16 H -0.185 1.185 17 C -0.116 4.116 18 C -0.089 4.089 19 H 0.059 0.941 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.110 0.890 23 H 0.060 0.940 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.820 1.334 -3.540 11.462 hybrid contribution 1.035 0.112 -0.219 1.064 sum -9.785 1.446 -3.759 10.581 Atomic orbital electron populations 1.22622 0.85051 1.02892 1.01752 1.62242 1.09747 1.15447 1.38357 1.20938 0.96159 0.90914 0.99079 1.21774 0.96648 0.99228 1.01879 1.25377 0.82333 0.93334 0.71519 1.90131 1.29470 1.81566 1.38649 1.18859 0.95141 0.90897 0.97318 0.94727 1.21551 1.01150 1.23667 1.10391 0.92929 1.25748 1.02000 0.95820 0.95218 1.69935 1.36811 1.34670 1.14736 0.85606 0.79911 0.79162 0.77329 1.21267 1.20321 1.18483 1.21879 0.94770 0.98259 0.96659 1.22571 0.97484 0.98198 0.90600 0.94150 0.90359 0.90453 0.88956 0.94004 0.89660 0.89923 0.92982 0.91480 0.93501 0.89308 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.00 127.69 1.15 1.66 16 2 N -0.53 -16.52 4.34 -939.31 -4.07 -20.59 16 3 C 0.06 1.78 4.83 84.61 0.41 2.19 16 4 C -0.16 -6.28 6.32 29.27 0.19 -6.09 16 5 C 0.40 20.37 4.48 29.59 0.13 20.50 16 6 O -0.52 -30.89 16.83 -1.46 -0.02 -30.91 16 7 C 0.00 -0.15 1.51 -12.64 -0.02 -0.17 16 8 H 0.03 1.93 8.01 -2.39 -0.02 1.91 16 9 C -0.53 -30.90 7.82 25.60 0.20 -30.70 16 10 H 0.05 3.02 7.62 -2.91 -0.02 3.00 16 11 C 0.01 0.63 5.07 84.65 0.43 1.06 16 12 N -0.92 -56.19 12.32 21.45 0.26 -55.92 16 13 Si 0.95 46.82 29.54 68.60 2.03 48.85 16 14 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 15 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 17 C -0.08 -3.14 5.76 31.67 0.18 -2.96 16 18 C 0.04 1.27 5.37 87.43 0.47 1.74 16 19 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 20 H 0.08 1.52 8.06 -2.38 -0.02 1.50 16 21 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 22 H 0.09 2.25 7.60 -2.39 -0.02 2.23 16 23 H 0.04 1.29 6.56 -2.39 -0.02 1.27 16 24 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 25 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.05 1.94 7.91 -2.38 -0.02 1.92 16 29 H 0.09 2.21 7.53 -2.39 -0.02 2.19 16 30 H 0.04 1.33 6.51 -2.39 -0.02 1.31 16 Total: -1.00 -69.92 243.29 2.44 -67.49 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.11 Total: 3.86 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 3.14 Total: -12.76 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -3.81 Total: -76.52 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.02 Total: -30.91 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -69.92 2.44 -67.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727340.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.383 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds