Wall clock time and date at job start Mon Mar 30 2020 02:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.44883 * 111.01752 * 2 1 4 4 C 1.54154 * 109.10017 * 140.42300 * 3 2 1 5 5 C 1.51962 * 110.97579 * 39.49465 * 4 3 2 6 6 O 1.20755 * 118.60957 * 221.58593 * 5 4 3 7 7 C 1.49087 * 122.77986 * 41.60621 * 5 4 3 8 8 H 1.09003 * 109.46300 * 32.19597 * 7 5 4 9 9 C 1.50704 * 109.45893 * 152.15389 * 7 5 4 10 10 H 1.07998 * 120.00077 * 120.00163 * 9 7 5 11 11 C 1.37879 * 119.99942 * 299.99702 * 9 7 5 12 12 N 1.31517 * 119.99985 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99897 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46895 * 60.00527 * 13 11 9 15 15 H 1.48497 * 109.47098 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47142 * 300.00296 * 13 11 9 17 17 C 1.55044 * 109.53546 * 272.17081 * 7 5 4 18 18 C 1.45939 * 110.99954 * 236.70983 * 2 1 3 19 19 H 1.08994 * 109.47217 * 183.29520 * 1 2 3 20 20 H 1.08999 * 109.47186 * 303.29827 * 1 2 3 21 21 H 1.09002 * 109.46967 * 63.29049 * 1 2 3 22 22 H 1.08995 * 109.50809 * 20.53588 * 3 2 1 23 23 H 1.09000 * 109.51377 * 260.31024 * 3 2 1 24 24 H 1.09002 * 109.16939 * 279.12428 * 4 3 2 25 25 H 1.09000 * 109.16889 * 159.86383 * 4 3 2 26 26 H 0.97001 * 119.99712 * 179.97438 * 12 11 9 27 27 H 1.08999 * 109.48397 * 188.02575 * 17 7 5 28 28 H 1.08995 * 109.48220 * 308.07434 * 17 7 5 29 29 H 1.08995 * 108.41930 * 92.71798 * 18 2 1 30 30 H 1.08997 * 108.41417 * 335.47477 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9886 1.3524 0.0000 4 6 3.2176 1.4206 0.9281 5 6 4.0747 0.1736 0.7883 6 8 4.5371 -0.3250 1.7861 7 6 4.3691 -0.4600 -0.5288 8 1 4.4147 0.3092 -1.2998 9 6 5.6928 -1.1769 -0.4563 10 1 5.7414 -2.2406 -0.6365 11 6 6.8418 -0.4746 -0.1600 12 7 6.7825 0.8207 0.0598 13 14 8.4823 -1.3633 -0.0695 14 1 8.7761 -1.9950 -1.3809 15 1 9.5543 -0.3910 0.2633 16 1 8.4207 -2.4105 0.9816 17 6 3.2503 -1.4752 -0.8774 18 6 1.9920 -0.7478 -1.1389 19 1 -0.3633 -1.0259 0.0591 20 1 -0.3633 0.5642 0.8589 21 1 -0.3633 0.4619 -0.9180 22 1 1.2211 2.0373 0.3604 23 1 2.2806 1.6303 -1.0127 24 1 2.8815 1.5100 1.9611 25 1 3.8138 2.2956 0.6688 26 1 7.5908 1.3146 0.2686 27 1 3.5353 -2.0395 -1.7653 28 1 3.1075 -2.1600 -0.0415 29 1 2.1612 -0.0512 -1.9599 30 1 1.2370 -1.4681 -1.4538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:51 Heat of formation + Delta-G solvation = -35.560044 kcal Electronic energy + Delta-G solvation = -13184.033790 eV Core-core repulsion = 10979.309301 eV Total energy + Delta-G solvation = -2204.724489 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.94547 -36.70441 -33.40841 -31.65084 -30.78928 -27.36393 -24.99860 -23.03104 -22.90260 -19.94619 -17.82641 -16.19666 -15.47941 -15.25478 -14.49625 -14.37220 -13.62975 -13.25550 -12.92947 -12.71218 -12.52318 -11.98104 -11.41299 -11.34064 -10.93081 -10.77086 -10.65860 -10.44232 -10.34390 -10.12035 -9.37260 -9.09514 -8.42670 -7.98109 -7.69691 -6.01875 -4.01469 3.37773 3.42190 3.46180 3.86602 4.30803 4.50427 5.26460 5.32335 5.39174 5.51640 5.62183 5.74291 5.88998 5.95315 6.02736 6.09569 6.36142 6.41533 6.47800 6.61738 6.79756 6.96608 7.41312 7.46336 7.53291 7.69178 7.93967 8.33248 8.97177 9.42954 9.64248 11.10710 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060024 B = 0.011619 C = 0.010650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.368280 B = 2409.288749 C = 2628.439477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.545 5.545 3 C 0.066 3.934 4 C -0.164 4.164 5 C 0.405 3.595 6 O -0.476 6.476 7 C 0.007 3.993 8 H 0.041 0.959 9 C -0.503 4.503 10 H 0.059 0.941 11 C 0.066 3.934 12 N -0.896 5.896 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.100 4.100 18 C 0.059 3.941 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.020 0.980 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 1.016 -2.827 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.270 5.270 3 C -0.063 4.063 4 C -0.203 4.203 5 C 0.280 3.720 6 O -0.349 6.349 7 C -0.012 4.012 8 H 0.059 0.941 9 C -0.541 4.541 10 H 0.077 0.923 11 C -0.136 4.136 12 N -0.534 5.534 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.138 4.138 18 C -0.068 4.068 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.039 0.961 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.666 0.672 -1.826 9.860 hybrid contribution 0.653 0.243 -0.653 0.954 sum -9.014 0.915 -2.479 9.393 Atomic orbital electron populations 1.22419 0.87657 1.01766 0.99836 1.60933 1.06926 1.14471 1.44626 1.22008 0.96314 0.88786 0.99159 1.22665 0.96620 1.01125 0.99895 1.24374 0.73795 0.81956 0.91903 1.90160 1.43633 1.60526 1.40604 1.19285 0.93936 0.94706 0.93282 0.94088 1.20847 0.90500 0.94663 1.48087 0.92251 1.24935 0.99420 0.94864 0.94379 1.69829 1.28947 1.06806 1.47837 0.86539 0.82880 0.79469 0.78412 1.20305 1.21372 1.20125 1.20884 0.93165 0.98374 1.01424 1.21147 0.97876 0.97217 0.90601 0.91710 0.91736 0.96096 0.91874 0.93350 0.91385 0.89516 0.92797 0.91277 0.92189 0.94602 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.13 60.06 0.55 0.95 16 2 N -0.55 -9.24 4.19 -247.94 -1.04 -10.27 16 3 C 0.07 1.10 5.60 -4.30 -0.02 1.07 16 4 C -0.16 -3.39 6.30 -26.66 -0.17 -3.56 16 5 C 0.40 10.42 4.36 -29.18 -0.13 10.29 16 6 O -0.48 -14.12 16.64 6.00 0.10 -14.02 16 7 C 0.01 0.18 1.93 -92.61 -0.18 0.00 16 8 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 9 C -0.50 -14.36 7.98 -34.44 -0.27 -14.63 16 10 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 11 C 0.07 1.91 5.07 -17.82 -0.09 1.82 16 12 N -0.90 -26.62 12.37 55.43 0.69 -25.94 16 13 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C -0.10 -2.07 5.14 -28.22 -0.14 -2.22 16 18 C 0.06 1.01 4.95 -6.92 -0.03 0.97 16 19 H 0.06 0.77 8.04 -51.93 -0.42 0.36 16 20 H 0.06 0.76 7.99 -51.93 -0.41 0.34 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 22 H 0.06 0.88 7.53 -51.93 -0.39 0.49 16 23 H 0.05 0.79 7.07 -51.93 -0.37 0.43 16 24 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 25 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 29 H 0.04 0.59 7.08 -51.93 -0.37 0.22 16 30 H 0.05 0.78 7.56 -51.93 -0.39 0.38 16 LS Contribution 244.64 15.07 3.69 3.69 Total: -1.00 -32.25 244.64 -6.51 -38.76 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -4.43 Total: -4.36 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.49 Total: -5.31 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.35 Total: -36.21 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.10 Total: -14.02 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.25 -6.51 -38.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.196 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds