Wall clock time and date at job start Mon Mar 30 2020 02:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.44883 * 111.01752 * 2 1 4 4 C 1.54154 * 109.10017 * 140.42300 * 3 2 1 5 5 C 1.51962 * 110.97579 * 39.49465 * 4 3 2 6 6 O 1.20755 * 118.60957 * 221.58593 * 5 4 3 7 7 C 1.49087 * 122.77986 * 41.60621 * 5 4 3 8 8 H 1.09003 * 109.46300 * 32.19597 * 7 5 4 9 9 C 1.50704 * 109.45893 * 152.15389 * 7 5 4 10 10 H 1.07998 * 120.00077 * 120.00163 * 9 7 5 11 11 C 1.37879 * 119.99942 * 299.99702 * 9 7 5 12 12 N 1.31517 * 119.99985 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99897 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46895 * 60.00527 * 13 11 9 15 15 H 1.48497 * 109.47098 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47142 * 300.00296 * 13 11 9 17 17 C 1.55044 * 109.53546 * 272.17081 * 7 5 4 18 18 C 1.45939 * 110.99954 * 236.70983 * 2 1 3 19 19 H 1.08994 * 109.47217 * 183.29520 * 1 2 3 20 20 H 1.08999 * 109.47186 * 303.29827 * 1 2 3 21 21 H 1.09002 * 109.46967 * 63.29049 * 1 2 3 22 22 H 1.08995 * 109.50809 * 20.53588 * 3 2 1 23 23 H 1.09000 * 109.51377 * 260.31024 * 3 2 1 24 24 H 1.09002 * 109.16939 * 279.12428 * 4 3 2 25 25 H 1.09000 * 109.16889 * 159.86383 * 4 3 2 26 26 H 0.97001 * 119.99712 * 179.97438 * 12 11 9 27 27 H 1.08999 * 109.48397 * 188.02575 * 17 7 5 28 28 H 1.08995 * 109.48220 * 308.07434 * 17 7 5 29 29 H 1.08995 * 108.41930 * 92.71798 * 18 2 1 30 30 H 1.08997 * 108.41417 * 335.47477 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9886 1.3524 0.0000 4 6 3.2176 1.4206 0.9281 5 6 4.0747 0.1736 0.7883 6 8 4.5371 -0.3250 1.7861 7 6 4.3691 -0.4600 -0.5288 8 1 4.4147 0.3092 -1.2998 9 6 5.6928 -1.1769 -0.4563 10 1 5.7414 -2.2406 -0.6365 11 6 6.8418 -0.4746 -0.1600 12 7 6.7825 0.8207 0.0598 13 14 8.4823 -1.3633 -0.0695 14 1 8.7761 -1.9950 -1.3809 15 1 9.5543 -0.3910 0.2633 16 1 8.4207 -2.4105 0.9816 17 6 3.2503 -1.4752 -0.8774 18 6 1.9920 -0.7478 -1.1389 19 1 -0.3633 -1.0259 0.0591 20 1 -0.3633 0.5642 0.8589 21 1 -0.3633 0.4619 -0.9180 22 1 1.2211 2.0373 0.3604 23 1 2.2806 1.6303 -1.0127 24 1 2.8815 1.5100 1.9611 25 1 3.8138 2.2956 0.6688 26 1 7.5908 1.3146 0.2686 27 1 3.5353 -2.0395 -1.7653 28 1 3.1075 -2.1600 -0.0415 29 1 2.1612 -0.0512 -1.9599 30 1 1.2370 -1.4681 -1.4538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:51 Heat of formation + Delta-G solvation = -57.937386 kcal Electronic energy + Delta-G solvation = -13185.004144 eV Core-core repulsion = 10979.309301 eV Total energy + Delta-G solvation = -2205.694844 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64052 -38.40037 -35.37256 -33.50879 -32.37647 -29.07182 -26.49304 -24.84852 -24.48973 -21.38328 -19.78671 -18.28521 -17.08343 -16.86661 -16.27973 -15.91387 -15.35383 -14.89774 -14.61079 -14.41892 -13.99771 -13.53858 -13.24180 -12.94525 -12.65645 -12.61898 -12.35944 -12.05713 -11.97787 -11.74840 -11.36024 -10.97992 -10.60849 -9.76906 -9.16631 -8.21410 -6.26460 1.35823 1.41330 1.46683 1.88162 2.41668 3.05298 3.16103 3.86107 4.06686 4.19221 4.29962 4.38538 4.52271 4.67320 4.80906 4.84255 4.86630 4.95474 5.01192 5.09609 5.12333 5.22187 5.50298 5.71877 5.75346 6.21081 6.27143 6.33479 6.78703 7.38088 7.47179 8.89972 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060024 B = 0.011619 C = 0.010650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.368280 B = 2409.288749 C = 2628.439477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.572 5.572 3 C 0.074 3.926 4 C -0.161 4.161 5 C 0.400 3.600 6 O -0.529 6.529 7 C -0.003 4.003 8 H 0.031 0.969 9 C -0.525 4.525 10 H 0.054 0.946 11 C 0.013 3.987 12 N -0.922 5.922 13 Si 0.956 3.044 14 H -0.260 1.260 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.090 4.090 18 C 0.061 3.939 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.099 0.901 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.262 0.738 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 1.109 -3.661 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.297 5.297 3 C -0.054 4.054 4 C -0.199 4.199 5 C 0.279 3.721 6 O -0.407 6.407 7 C -0.023 4.023 8 H 0.049 0.951 9 C -0.562 4.562 10 H 0.073 0.927 11 C -0.186 4.186 12 N -0.561 5.561 13 Si 0.781 3.219 14 H -0.184 1.184 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.129 4.129 18 C -0.067 4.067 19 H 0.091 0.909 20 H 0.094 0.906 21 H 0.059 0.941 22 H 0.117 0.883 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.161 0.767 -2.691 11.507 hybrid contribution 1.085 0.191 -0.388 1.168 sum -10.076 0.958 -3.079 10.579 Atomic orbital electron populations 1.22487 0.84723 1.02879 1.01385 1.60787 1.09640 1.14391 1.44842 1.21964 0.95289 0.89827 0.98362 1.22622 0.97737 0.98055 1.01534 1.24947 0.73088 0.82939 0.91139 1.90131 1.46051 1.62560 1.41930 1.19361 0.94458 0.95408 0.93029 0.95097 1.21284 0.92424 0.94771 1.47756 0.92729 1.25738 1.02885 0.95688 0.94273 1.69925 1.29574 1.07885 1.48755 0.85638 0.79047 0.78297 0.78880 1.18404 1.20800 1.20738 1.20824 0.93718 0.97344 1.00972 1.21031 0.96729 0.97950 0.90962 0.90900 0.90585 0.94071 0.88258 0.92943 0.91061 0.89666 0.92960 0.90281 0.94074 0.93770 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.13 127.69 1.17 1.86 16 2 N -0.57 -17.72 4.19 -938.36 -3.93 -21.65 16 3 C 0.07 2.27 5.60 87.07 0.49 2.75 16 4 C -0.16 -6.52 6.30 30.64 0.19 -6.33 16 5 C 0.40 20.81 4.36 29.01 0.13 20.94 16 6 O -0.53 -32.28 16.64 -1.43 -0.02 -32.31 16 7 C 0.00 -0.18 1.93 -12.08 -0.02 -0.20 16 8 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 9 C -0.52 -30.42 7.98 25.60 0.20 -30.22 16 10 H 0.05 3.11 7.75 -2.91 -0.02 3.09 16 11 C 0.01 0.76 5.07 84.65 0.43 1.19 16 12 N -0.92 -55.71 12.37 21.45 0.27 -55.44 16 13 Si 0.96 46.53 29.54 68.60 2.03 48.55 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 17 C -0.09 -3.67 5.14 29.63 0.15 -3.52 16 18 C 0.06 1.91 4.95 84.82 0.42 2.33 16 19 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 20 H 0.08 1.47 7.99 -2.39 -0.02 1.45 16 21 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.10 2.34 7.53 -2.39 -0.02 2.32 16 23 H 0.05 1.57 7.07 -2.39 -0.02 1.56 16 24 H 0.07 2.80 8.13 -2.39 -0.02 2.78 16 25 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 29 H 0.04 1.33 7.08 -2.39 -0.02 1.31 16 30 H 0.08 2.15 7.56 -2.39 -0.02 2.13 16 Total: -1.00 -70.57 244.64 2.60 -67.97 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.10 Total: 4.06 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 3.16 Total: -11.20 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -3.67 Total: -77.09 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.02 Total: -32.31 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -70.57 2.60 -67.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.037 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds