Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44122 * 111.00161 * 2 1 4 4 C 1.52260 * 104.84196 * 135.04714 * 3 2 1 5 5 C 1.46815 * 114.41326 * 93.17218 * 4 3 2 6 6 C 1.54652 * 106.17272 * 301.63524 * 5 4 3 7 7 O 1.20750 * 120.66714 * 245.85892 * 6 5 4 8 8 C 1.48151 * 118.66561 * 65.87786 * 6 5 4 9 9 H 1.09000 * 108.07176 * 34.44928 * 8 6 5 10 10 C 1.50701 * 108.07178 * 151.00349 * 8 6 5 11 11 H 1.08002 * 119.99761 * 119.99432 * 10 8 6 12 12 C 1.37871 * 119.99694 * 300.27995 * 10 8 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.48788 * 110.99844 * 235.53294 * 2 1 3 19 19 H 1.09003 * 109.47650 * 56.04324 * 1 2 3 20 20 H 1.09000 * 109.47253 * 176.04262 * 1 2 3 21 21 H 1.09004 * 109.47262 * 296.04324 * 1 2 3 22 22 H 1.09006 * 110.35880 * 16.22375 * 3 2 1 23 23 H 1.09000 * 110.49957 * 253.95149 * 3 2 1 24 24 H 1.08998 * 108.49251 * 331.89628 * 4 3 2 25 25 H 1.08997 * 108.36976 * 214.36140 * 4 3 2 26 26 H 1.09002 * 110.10501 * 182.47536 * 5 4 3 27 27 H 1.09004 * 110.11114 * 60.80321 * 5 4 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 29 29 H 1.09003 * 109.19810 * 42.66041 * 18 2 1 30 30 H 1.08996 * 109.20347 * 283.36383 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9855 1.3455 0.0000 4 6 3.0977 1.3363 1.0399 5 6 4.4345 1.0662 0.4963 6 6 4.3461 -0.3121 -0.1995 7 8 4.9647 -1.2577 0.2263 8 6 3.4877 -0.4490 -1.3992 9 1 3.5310 0.4879 -1.9546 10 6 4.0705 -1.5320 -2.2700 11 1 3.4850 -2.4080 -2.5069 12 6 5.3534 -1.4071 -2.7595 13 7 6.0664 -0.3404 -2.4710 14 14 6.0787 -2.7532 -3.8326 15 1 5.7732 -2.4686 -5.2577 16 1 7.5506 -2.7993 -3.6416 17 1 5.4888 -4.0617 -3.4517 18 6 2.0022 -0.7861 -1.1452 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3634 -1.0252 -0.0709 21 1 -0.3634 0.4512 0.9233 22 1 1.2053 2.0512 0.2855 23 1 2.3858 1.6007 -0.9812 24 1 2.8674 0.5754 1.7856 25 1 3.1148 2.3081 1.5331 26 1 5.1671 1.0326 1.3026 27 1 4.7070 1.8345 -0.2274 28 1 6.9691 -0.2528 -2.8151 29 1 1.4239 -0.5539 -2.0395 30 1 1.9085 -1.8494 -0.9247 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = -53.737557 kcal Electronic energy + Delta-G solvation = -13234.851915 eV Core-core repulsion = 11029.339190 eV Total energy + Delta-G solvation = -2205.512726 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.74516 -38.28499 -35.22510 -34.37298 -32.15485 -28.19115 -27.24775 -25.04020 -24.13153 -21.17683 -19.83500 -18.59249 -17.08649 -16.67497 -16.33088 -15.86009 -15.66096 -14.84351 -14.63204 -14.29668 -14.18820 -13.52167 -13.19619 -13.08834 -12.84231 -12.52585 -12.40076 -11.91527 -11.83067 -11.65795 -11.43285 -11.26277 -10.63228 -9.77266 -9.13233 -8.27065 -6.32899 1.34374 1.38626 1.47831 1.79248 2.37797 3.06282 3.19651 3.66882 4.08528 4.17723 4.35790 4.44874 4.49159 4.61511 4.72534 4.83452 4.86802 5.01531 5.08183 5.08838 5.12166 5.40223 5.45046 5.57420 5.65949 6.07723 6.20380 6.43223 6.72126 7.30884 7.38913 8.84386 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046596 B = 0.012951 C = 0.011157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.765731 B = 2161.462441 C = 2509.109004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.563 5.563 3 C 0.048 3.952 4 C -0.103 4.103 5 C -0.157 4.157 6 C 0.400 3.600 7 O -0.518 6.518 8 C -0.015 4.015 9 H 0.034 0.966 10 C -0.530 4.530 11 H 0.056 0.944 12 C 0.015 3.985 13 N -0.920 5.920 14 Si 0.959 3.041 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.272 1.272 18 C 0.093 3.907 19 H 0.033 0.967 20 H 0.064 0.936 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.264 0.736 29 H 0.045 0.955 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 5.251 3.586 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.080 4.080 4 C -0.141 4.141 5 C -0.196 4.196 6 C 0.278 3.722 7 O -0.395 6.395 8 C -0.034 4.034 9 H 0.052 0.948 10 C -0.568 4.568 11 H 0.074 0.926 12 C -0.185 4.185 13 N -0.559 5.559 14 Si 0.785 3.215 15 H -0.189 1.189 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.035 4.035 19 H 0.052 0.948 20 H 0.083 0.917 21 H 0.105 0.895 22 H 0.119 0.881 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.569 4.614 4.202 10.601 hybrid contribution 0.649 -0.341 -1.472 1.644 sum -7.920 4.273 2.730 9.404 Atomic orbital electron populations 1.22506 0.85998 1.02148 1.01662 1.62327 1.09239 1.14190 1.43026 1.21826 0.97787 0.89693 0.98681 1.20282 0.92064 1.02883 0.98849 1.21724 0.99980 0.97074 1.00792 1.25284 0.76625 0.88399 0.81897 1.90124 1.41127 1.44947 1.63305 1.19184 0.92592 0.98138 0.93498 0.94765 1.21300 0.99872 1.05357 1.30257 0.92580 1.25729 0.97336 0.97888 0.97527 1.69914 1.10661 1.29090 1.46189 0.85525 0.77266 0.79589 0.79163 1.18911 1.21244 1.19668 1.22451 0.92493 0.97385 0.91136 0.94848 0.91746 0.89547 0.88103 0.93642 0.92065 0.89067 0.90927 0.89742 0.92731 0.93723 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.23 127.69 1.18 1.78 16 2 N -0.56 -18.87 4.17 -923.09 -3.85 -22.72 16 3 C 0.05 1.46 5.51 86.58 0.48 1.93 16 4 C -0.10 -3.24 5.12 28.43 0.15 -3.09 16 5 C -0.16 -6.32 6.09 29.24 0.18 -6.14 16 6 C 0.40 20.63 4.60 29.63 0.14 20.77 16 7 O -0.52 -31.13 16.80 -1.42 -0.02 -31.15 16 8 C -0.01 -0.74 1.42 -12.58 -0.02 -0.76 16 9 H 0.03 1.80 6.87 -2.39 -0.02 1.78 16 10 C -0.53 -30.24 7.84 25.60 0.20 -30.04 16 11 H 0.06 3.15 7.64 -2.91 -0.02 3.13 16 12 C 0.01 0.84 5.05 84.65 0.43 1.27 16 13 N -0.92 -54.66 12.31 21.45 0.26 -54.40 16 14 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 15 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 17 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 18 C 0.09 3.81 5.17 86.42 0.45 4.26 16 19 H 0.03 0.75 8.13 -2.39 -0.02 0.73 16 20 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 21 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.10 2.27 7.62 -2.38 -0.02 2.25 16 23 H 0.05 1.54 5.94 -2.39 -0.01 1.52 16 24 H 0.06 2.07 7.80 -2.39 -0.02 2.05 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 29 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 30 H 0.05 2.39 7.92 -2.39 -0.02 2.37 16 Total: -1.00 -67.96 243.06 2.70 -65.27 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.11 Total: 5.08 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 3.17 Total: -10.02 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.58 Total: -77.12 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.02 Total: -31.15 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.96 2.70 -65.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.527 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds