Wall clock time and date at job start Mon Mar 30 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46789 * 111.00278 * 2 1 4 4 C 1.53018 * 109.89727 * 170.54421 * 3 2 1 5 5 C 1.53385 * 109.13064 * 62.85893 * 4 3 2 6 6 H 1.09001 * 109.73138 * 67.23566 * 5 4 3 7 7 C 1.52999 * 109.73219 * 187.88168 * 5 4 3 8 8 C 1.50700 * 109.47077 * 184.99717 * 7 5 4 9 9 H 1.07995 * 119.99849 * 359.97438 * 8 7 5 10 10 C 1.37878 * 119.99783 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00160 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99622 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47441 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46856 * 120.00064 * 12 10 8 15 15 H 1.48501 * 109.47021 * 239.99926 * 12 10 8 16 16 C 1.51495 * 108.26299 * 307.64742 * 5 4 3 17 17 O 1.20764 * 121.05383 * 229.00205 * 16 5 4 18 18 C 1.47093 * 110.99647 * 235.83090 * 2 1 3 19 19 H 1.09000 * 109.47830 * 180.21349 * 1 2 3 20 20 H 1.09008 * 109.47201 * 300.22003 * 1 2 3 21 21 H 1.09004 * 109.46972 * 60.20827 * 1 2 3 22 22 H 1.08999 * 109.40329 * 290.67748 * 3 2 1 23 23 H 1.09006 * 109.40196 * 50.41655 * 3 2 1 24 24 H 1.09002 * 109.52895 * 182.74647 * 4 3 2 25 25 H 1.08992 * 109.52919 * 302.89012 * 4 3 2 26 26 H 1.09001 * 109.46723 * 304.99752 * 7 5 4 27 27 H 1.09001 * 109.47146 * 64.99461 * 7 5 4 28 28 H 0.97001 * 119.99651 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.62699 * 299.97584 * 18 2 1 30 30 H 1.09001 * 109.62699 * 60.35365 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3704 0.0000 4 6 3.5067 1.3479 0.2364 5 6 4.1855 0.6047 -0.9211 6 1 4.0802 1.1808 -1.8404 7 6 5.6688 0.4018 -0.6055 8 6 6.3553 -0.2179 -1.7953 9 1 5.7901 -0.4447 -2.6872 10 6 7.7050 -0.4952 -1.7453 11 7 8.3931 -0.2194 -0.6590 12 14 8.5558 -1.2640 -3.2199 13 1 7.5671 -1.4746 -4.3076 14 1 9.6316 -0.3588 -3.6981 15 1 9.1452 -2.5690 -2.8265 16 6 3.5080 -0.7406 -1.0837 17 8 4.1541 -1.7577 -1.1646 18 6 1.9960 -0.7713 -1.1362 19 1 -0.3635 -1.0276 0.0038 20 1 -0.3634 0.5173 0.8881 21 1 -0.3633 0.5106 -0.8919 22 1 1.7860 1.8385 -0.9619 23 1 1.5133 1.9432 0.7924 24 1 3.8834 2.3696 0.2839 25 1 3.7212 0.8365 1.1747 26 1 6.1277 1.3650 -0.3821 27 1 5.7700 -0.2576 0.2565 28 1 9.3428 -0.4141 -0.6240 29 1 1.6483 -1.8023 -1.0716 30 1 1.6531 -0.3272 -2.0707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:45 Heat of formation + Delta-G solvation = -40.869134 kcal Electronic energy + Delta-G solvation = -12774.526013 eV Core-core repulsion = 10569.571304 eV Total energy + Delta-G solvation = -2204.954709 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.45378 -36.84503 -34.04430 -32.16275 -29.10267 -28.52330 -25.53426 -23.11967 -21.94344 -20.92382 -18.32874 -16.23161 -15.70840 -15.39402 -14.82537 -14.59152 -14.35389 -13.56302 -13.18019 -12.64115 -12.36566 -12.24937 -11.73390 -11.54253 -11.15765 -11.12038 -10.93694 -10.56900 -10.35921 -10.23357 -9.39241 -8.97591 -8.62211 -8.30089 -8.14557 -5.88402 -3.86804 2.74198 3.39163 3.46147 3.51021 4.08239 4.56839 4.71116 5.05815 5.18163 5.30167 5.38110 5.48807 5.57579 5.60381 5.70867 5.79649 5.96831 6.03636 6.18325 6.46779 6.70569 6.93653 6.99918 7.09606 7.66912 7.82229 8.07675 8.38979 8.50382 9.14143 9.74232 11.23758 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065019 B = 0.009300 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.540206 B = 3010.120018 C = 3266.793947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.535 5.535 3 C 0.050 3.950 4 C -0.107 4.107 5 C -0.131 4.131 6 H 0.087 0.913 7 C 0.035 3.965 8 C -0.497 4.497 9 H 0.051 0.949 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.890 3.110 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.364 3.636 17 O -0.417 6.417 18 C 0.004 3.996 19 H 0.067 0.933 20 H 0.069 0.931 21 H 0.024 0.976 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.258 0.742 29 H 0.092 0.908 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.312 3.445 0.481 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.261 5.261 3 C -0.077 4.077 4 C -0.145 4.145 5 C -0.150 4.150 6 H 0.105 0.895 7 C -0.002 4.002 8 C -0.535 4.535 9 H 0.069 0.931 10 C -0.145 4.145 11 N -0.540 5.540 12 Si 0.719 3.281 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.234 3.766 17 O -0.285 6.285 18 C -0.125 4.125 19 H 0.086 0.914 20 H 0.088 0.912 21 H 0.043 0.957 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.616 2.632 0.929 13.899 hybrid contribution 0.126 0.003 -1.559 1.564 sum -13.490 2.634 -0.630 13.760 Atomic orbital electron populations 1.22378 0.87225 1.02069 1.00571 1.62000 1.07536 1.14366 1.42229 1.22219 0.96804 0.88346 1.00343 1.21670 0.92373 1.00978 0.99509 1.22098 1.00191 0.94169 0.98537 0.89549 1.19026 0.86189 0.97288 0.97655 1.21102 0.93318 1.39428 0.99679 0.93083 1.24941 0.97627 0.96025 0.95928 1.69965 1.07803 1.49086 1.27184 0.86556 0.79399 0.79043 0.83111 1.19936 1.21228 1.21083 1.24665 0.89061 0.91486 0.71339 1.90430 1.67920 1.36928 1.33213 1.23032 0.96555 0.99968 0.92931 0.91401 0.91202 0.95711 0.94628 0.90652 0.90674 0.90882 0.95905 0.96020 0.93250 0.89015 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.84 16 2 N -0.54 -7.53 4.92 -243.89 -1.20 -8.73 16 3 C 0.05 0.67 5.37 -3.87 -0.02 0.65 16 4 C -0.11 -1.75 5.43 -26.52 -0.14 -1.89 16 5 C -0.13 -2.68 2.46 -91.18 -0.22 -2.90 16 6 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 7 C 0.04 0.93 4.16 -27.88 -0.12 0.82 16 8 C -0.50 -14.59 7.68 -34.44 -0.26 -14.85 16 9 H 0.05 1.49 7.54 -52.49 -0.40 1.09 16 10 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -28.02 13.29 55.43 0.74 -27.29 16 12 Si 0.89 22.88 29.54 -169.99 -5.02 17.86 16 13 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -7.30 7.11 56.52 0.40 -6.89 16 16 C 0.36 7.50 6.52 -28.34 -0.18 7.31 16 17 O -0.42 -10.48 15.78 6.00 0.09 -10.38 16 18 C 0.00 0.06 5.70 -4.56 -0.03 0.03 16 19 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.07 0.64 8.12 -51.92 -0.42 0.21 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 23 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.63 8.12 -51.93 -0.42 0.20 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 250.61 15.07 3.78 3.78 Total: -1.00 -33.14 250.61 -6.71 -39.85 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -4.60 Total: -6.63 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.50 Total: -8.46 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.46 Total: -36.02 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.14 -6.71 -39.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.019 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds