Wall clock time and date at job start Mon Mar 30 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46789 * 111.00278 * 2 1 4 4 C 1.53018 * 109.89727 * 170.54421 * 3 2 1 5 5 C 1.53385 * 109.13064 * 62.85893 * 4 3 2 6 6 H 1.09001 * 109.73138 * 67.23566 * 5 4 3 7 7 C 1.52999 * 109.73219 * 187.88168 * 5 4 3 8 8 C 1.50700 * 109.47077 * 184.99717 * 7 5 4 9 9 H 1.07995 * 119.99849 * 359.97438 * 8 7 5 10 10 C 1.37878 * 119.99783 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00160 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99622 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47441 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46856 * 120.00064 * 12 10 8 15 15 H 1.48501 * 109.47021 * 239.99926 * 12 10 8 16 16 C 1.51495 * 108.26299 * 307.64742 * 5 4 3 17 17 O 1.20764 * 121.05383 * 229.00205 * 16 5 4 18 18 C 1.47093 * 110.99647 * 235.83090 * 2 1 3 19 19 H 1.09000 * 109.47830 * 180.21349 * 1 2 3 20 20 H 1.09008 * 109.47201 * 300.22003 * 1 2 3 21 21 H 1.09004 * 109.46972 * 60.20827 * 1 2 3 22 22 H 1.08999 * 109.40329 * 290.67748 * 3 2 1 23 23 H 1.09006 * 109.40196 * 50.41655 * 3 2 1 24 24 H 1.09002 * 109.52895 * 182.74647 * 4 3 2 25 25 H 1.08992 * 109.52919 * 302.89012 * 4 3 2 26 26 H 1.09001 * 109.46723 * 304.99752 * 7 5 4 27 27 H 1.09001 * 109.47146 * 64.99461 * 7 5 4 28 28 H 0.97001 * 119.99651 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.62699 * 299.97584 * 18 2 1 30 30 H 1.09001 * 109.62699 * 60.35365 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3704 0.0000 4 6 3.5067 1.3479 0.2364 5 6 4.1855 0.6047 -0.9211 6 1 4.0802 1.1808 -1.8404 7 6 5.6688 0.4018 -0.6055 8 6 6.3553 -0.2179 -1.7953 9 1 5.7901 -0.4447 -2.6872 10 6 7.7050 -0.4952 -1.7453 11 7 8.3931 -0.2194 -0.6590 12 14 8.5558 -1.2640 -3.2199 13 1 7.5671 -1.4746 -4.3076 14 1 9.6316 -0.3588 -3.6981 15 1 9.1452 -2.5690 -2.8265 16 6 3.5080 -0.7406 -1.0837 17 8 4.1541 -1.7577 -1.1646 18 6 1.9960 -0.7713 -1.1362 19 1 -0.3635 -1.0276 0.0038 20 1 -0.3634 0.5173 0.8881 21 1 -0.3633 0.5106 -0.8919 22 1 1.7860 1.8385 -0.9619 23 1 1.5133 1.9432 0.7924 24 1 3.8834 2.3696 0.2839 25 1 3.7212 0.8365 1.1747 26 1 6.1277 1.3650 -0.3821 27 1 5.7700 -0.2576 0.2565 28 1 9.3428 -0.4141 -0.6240 29 1 1.6483 -1.8023 -1.0716 30 1 1.6531 -0.3272 -2.0707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:45 Heat of formation + Delta-G solvation = -64.755777 kcal Electronic energy + Delta-G solvation = -12775.561815 eV Core-core repulsion = 10569.571304 eV Total energy + Delta-G solvation = -2205.990511 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.96868 -38.20886 -35.87671 -34.10078 -30.65590 -29.91807 -27.14422 -24.66887 -23.47622 -22.40007 -19.85660 -18.47234 -17.06276 -16.85535 -16.52772 -16.05235 -15.72867 -15.19927 -14.59948 -14.22295 -13.87519 -13.43841 -13.32334 -13.05229 -12.92945 -12.83321 -12.48126 -12.27703 -12.15670 -11.86474 -11.41484 -10.98087 -10.60740 -10.12899 -9.29753 -8.18188 -6.24147 1.16158 1.34058 1.36804 1.48537 2.40715 3.01173 3.14480 3.26288 3.90193 3.99470 4.09354 4.32924 4.48808 4.54857 4.58727 4.72190 4.77019 4.92654 5.02283 5.09500 5.22909 5.29687 5.44452 5.64314 5.80549 5.95302 6.11775 6.23719 6.78954 6.86997 7.41051 8.94580 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065019 B = 0.009300 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.540206 B = 3010.120018 C = 3266.793947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.057 3.943 4 C -0.101 4.101 5 C -0.133 4.133 6 H 0.100 0.900 7 C 0.041 3.959 8 C -0.511 4.511 9 H 0.048 0.952 10 C -0.006 4.006 11 N -0.937 5.937 12 Si 0.959 3.041 13 H -0.267 1.267 14 H -0.271 1.271 15 H -0.283 1.283 16 C 0.360 3.640 17 O -0.477 6.477 18 C 0.019 3.981 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.006 0.994 27 H -0.020 1.020 28 H 0.261 0.739 29 H 0.098 0.902 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.417 4.186 -0.465 16.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.071 4.071 4 C -0.139 4.139 5 C -0.152 4.152 6 H 0.118 0.882 7 C 0.004 3.996 8 C -0.549 4.549 9 H 0.066 0.934 10 C -0.202 4.202 11 N -0.579 5.579 12 Si 0.784 3.216 13 H -0.192 1.192 14 H -0.196 1.196 15 H -0.209 1.209 16 C 0.235 3.765 17 O -0.349 6.349 18 C -0.110 4.110 19 H 0.092 0.908 20 H 0.105 0.895 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.024 0.976 27 H -0.001 1.001 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.758 3.401 -0.018 16.120 hybrid contribution 0.767 -0.194 -1.209 1.445 sum -14.991 3.206 -1.227 15.379 Atomic orbital electron populations 1.22460 0.84408 1.03062 1.02140 1.61997 1.10008 1.14687 1.41491 1.22200 0.93932 0.88501 1.02428 1.21624 0.95020 1.00726 0.96529 1.22051 0.96627 0.95647 1.00872 0.88175 1.18845 0.90560 0.95007 0.95204 1.21466 0.93811 1.39298 1.00348 0.93417 1.25881 0.98617 0.96659 0.99045 1.70089 1.08240 1.50245 1.29283 0.85492 0.78484 0.78151 0.79490 1.19169 1.19610 1.20919 1.25341 0.91895 0.90334 0.68958 1.90407 1.69884 1.38473 1.36154 1.22816 0.91917 1.01270 0.94963 0.90842 0.89543 0.94116 0.92838 0.87693 0.89193 0.92809 0.97569 1.00149 0.92984 0.88377 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.57 127.69 1.22 1.66 16 2 N -0.55 -13.76 4.92 -925.54 -4.55 -18.32 16 3 C 0.06 1.29 5.37 86.33 0.46 1.75 16 4 C -0.10 -3.17 5.43 30.73 0.17 -3.00 16 5 C -0.13 -5.45 2.46 -11.16 -0.03 -5.47 16 6 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 7 C 0.04 2.25 4.16 29.85 0.12 2.37 16 8 C -0.51 -30.84 7.68 25.60 0.20 -30.64 16 9 H 0.05 2.84 7.54 -2.91 -0.02 2.82 16 10 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 11 N -0.94 -60.03 13.29 21.45 0.28 -59.74 16 12 Si 0.96 47.59 29.54 68.60 2.03 49.61 16 13 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 16 C 0.36 14.81 6.52 29.55 0.19 15.00 16 17 O -0.48 -24.73 15.78 -1.46 -0.02 -24.75 16 18 C 0.02 0.53 5.70 85.72 0.49 1.02 16 19 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 21 H 0.04 0.56 8.14 -2.38 -0.02 0.55 16 22 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 23 H 0.10 1.84 8.06 -2.38 -0.02 1.83 16 24 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H -0.02 -1.24 8.12 -2.39 -0.02 -1.26 16 28 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.51 250.61 2.12 -72.39 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: 1.10 Total: -2.00 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 3.29 Total: -17.19 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -4.27 Total: -78.06 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.02 Total: -24.75 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -74.51 2.12 -72.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.632 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds