Wall clock time and date at job start Mon Mar 30 2020 02:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46791 * 110.99777 * 2 1 4 4 C 1.53021 * 109.89613 * 189.45491 * 3 2 1 5 5 C 1.53382 * 109.13241 * 297.15140 * 4 3 2 6 6 H 1.09000 * 109.76982 * 292.78017 * 5 4 3 7 7 C 1.52997 * 109.73314 * 172.11591 * 5 4 3 8 8 C 1.50706 * 109.47238 * 176.33099 * 7 5 4 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 5 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 5 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.51418 * 108.12046 * 52.45957 * 5 4 3 17 17 O 1.20764 * 121.00594 * 130.88690 * 16 5 4 18 18 C 1.47092 * 110.99870 * 124.17501 * 2 1 3 19 19 H 1.09002 * 109.47489 * 291.87598 * 1 2 3 20 20 H 1.09005 * 109.47416 * 51.87506 * 1 2 3 21 21 H 1.09001 * 109.47113 * 171.87580 * 1 2 3 22 22 H 1.08999 * 109.40470 * 309.58263 * 3 2 1 23 23 H 1.09004 * 109.40122 * 69.41533 * 3 2 1 24 24 H 1.08992 * 109.53183 * 177.25175 * 4 3 2 25 25 H 1.09001 * 109.52575 * 57.03932 * 4 3 2 26 26 H 1.09001 * 109.46832 * 56.33413 * 7 5 4 27 27 H 1.09000 * 109.47611 * 296.33710 * 7 5 4 28 28 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 29 29 H 1.08992 * 109.62923 * 60.02317 * 18 2 1 30 30 H 1.09001 * 109.62084 * 299.45081 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3704 0.0000 4 6 3.5067 1.3480 -0.2364 5 6 4.1855 0.6047 0.9209 6 1 4.0803 1.1800 1.8407 7 6 5.6687 0.4019 0.6053 8 6 6.3487 -0.2478 1.7829 9 1 5.7796 -0.4921 2.6677 10 6 7.6971 -0.5304 1.7307 11 7 8.3902 -0.2325 0.6533 12 14 8.5397 -1.3364 3.1901 13 1 7.5466 -1.5669 4.2698 14 1 9.1242 -2.6350 2.7691 15 1 9.6184 -0.4476 3.6918 16 6 3.5079 -0.7402 1.0787 17 8 4.1544 -1.7573 1.1561 18 6 1.9961 -0.7714 1.1361 19 1 -0.3634 0.3829 0.9537 20 1 -0.3634 0.6345 -0.8084 21 1 -0.3633 -1.0174 -0.1452 22 1 1.5132 1.9433 -0.7923 23 1 1.7873 1.8380 0.9625 24 1 3.8833 2.3697 -0.2839 25 1 3.7212 0.8355 -1.1742 26 1 6.1329 1.3676 0.4052 27 1 5.7696 -0.2382 -0.2711 28 1 9.3388 -0.4317 0.6165 29 1 1.6484 -1.8023 1.0715 30 1 1.6560 -0.3253 2.0707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:47 Heat of formation + Delta-G solvation = -64.420815 kcal Electronic energy + Delta-G solvation = -12780.711624 eV Core-core repulsion = 10574.735637 eV Total energy + Delta-G solvation = -2205.975986 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97547 -38.20664 -35.87293 -34.10007 -30.65201 -29.92035 -27.14245 -24.66560 -23.47273 -22.39953 -19.85747 -18.47364 -17.06400 -16.84878 -16.52615 -16.05449 -15.72489 -15.19700 -14.59767 -14.22240 -13.86483 -13.43243 -13.32411 -13.05762 -12.93424 -12.83302 -12.47891 -12.27877 -12.14768 -11.86865 -11.41524 -10.97821 -10.60657 -10.12154 -9.29683 -8.18021 -6.23725 1.16693 1.34009 1.36750 1.48507 2.40836 3.01499 3.14694 3.26344 3.90391 3.99617 4.09715 4.33076 4.48915 4.54573 4.59584 4.71333 4.77027 4.92777 5.02475 5.09645 5.23028 5.29784 5.44396 5.64353 5.80646 5.95411 6.11990 6.23871 6.79471 6.87223 7.41322 8.94754 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064994 B = 0.009330 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.706403 B = 3000.353346 C = 3262.012467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.056 3.944 4 C -0.101 4.101 5 C -0.133 4.133 6 H 0.101 0.899 7 C 0.041 3.959 8 C -0.510 4.510 9 H 0.047 0.953 10 C -0.006 4.006 11 N -0.937 5.937 12 Si 0.959 3.041 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.359 3.641 17 O -0.476 6.476 18 C 0.019 3.981 19 H 0.040 0.960 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.006 0.994 27 H -0.020 1.020 28 H 0.261 0.739 29 H 0.098 0.902 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.424 4.229 0.476 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.071 4.071 4 C -0.139 4.139 5 C -0.152 4.152 6 H 0.119 0.881 7 C 0.004 3.996 8 C -0.548 4.548 9 H 0.066 0.934 10 C -0.202 4.202 11 N -0.579 5.579 12 Si 0.784 3.216 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.196 1.196 16 C 0.234 3.766 17 O -0.349 6.349 18 C -0.109 4.109 19 H 0.058 0.942 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.123 0.877 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.024 0.976 27 H -0.001 1.001 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.763 3.445 0.028 16.135 hybrid contribution 0.765 -0.215 1.200 1.439 sum -14.998 3.229 1.228 15.391 Atomic orbital electron populations 1.22464 0.84414 1.03381 1.01821 1.61997 1.10009 1.14675 1.41534 1.22212 0.93934 0.88504 1.02425 1.21631 0.95050 1.00727 0.96525 1.22038 0.96625 0.95656 1.00893 0.88133 1.18849 0.90573 0.95039 0.95174 1.21462 0.93848 1.38270 1.01213 0.93428 1.25877 0.98572 0.96811 0.98966 1.70093 1.08150 1.49987 1.29662 0.85494 0.78470 0.78194 0.79470 1.19199 1.20920 1.19618 1.25325 0.91884 0.90368 0.68995 1.90409 1.69831 1.38524 1.36091 1.22825 0.91924 1.01278 0.94902 0.94152 0.89456 0.90903 0.87653 0.92838 0.89182 0.92841 0.97571 1.00140 0.92999 0.88395 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.63 127.69 1.23 1.66 16 2 N -0.56 -13.78 4.92 -925.56 -4.55 -18.33 16 3 C 0.06 1.28 5.37 86.33 0.46 1.75 16 4 C -0.10 -3.17 5.43 30.73 0.17 -3.01 16 5 C -0.13 -5.45 2.48 -11.18 -0.03 -5.48 16 6 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 7 C 0.04 2.23 4.18 29.85 0.12 2.36 16 8 C -0.51 -30.77 7.63 25.60 0.20 -30.58 16 9 H 0.05 2.84 7.46 -2.91 -0.02 2.81 16 10 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 11 N -0.94 -60.06 13.29 21.45 0.28 -59.78 16 12 Si 0.96 47.66 29.54 68.60 2.03 49.68 16 13 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 C 0.36 14.80 6.49 29.53 0.19 14.99 16 17 O -0.48 -24.72 15.68 -1.46 -0.02 -24.74 16 18 C 0.02 0.54 5.71 85.72 0.49 1.03 16 19 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 20 H 0.09 1.15 7.97 -2.38 -0.02 1.14 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 22 H 0.11 1.84 7.96 -2.39 -0.02 1.82 16 23 H 0.05 1.07 8.13 -2.38 -0.02 1.05 16 24 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H -0.02 -1.24 8.14 -2.39 -0.02 -1.25 16 28 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.56 250.21 2.13 -72.43 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: 1.10 Total: -2.09 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 3.30 Total: -17.17 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -4.27 Total: -78.11 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.02 Total: -24.74 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.68 kcal Total: -74.56 2.13 -72.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.006 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds