Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47079 * 2 1 4 4 H 1.08999 * 110.21397 * 56.31054 * 3 2 1 5 5 C 1.54478 * 110.24434 * 294.38443 * 3 2 1 6 6 H 1.09004 * 110.97260 * 333.69969 * 5 3 2 7 7 C 1.50694 * 110.97105 * 97.42750 * 5 3 2 8 8 H 1.08007 * 120.00315 * 359.97438 * 7 5 3 9 9 C 1.37882 * 120.00299 * 179.97438 * 7 5 3 10 10 N 1.31514 * 119.99540 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 120.00138 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47029 * 60.00097 * 11 9 7 13 13 H 1.48500 * 109.47239 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47571 * 299.99996 * 11 9 7 15 15 C 1.54628 * 101.76101 * 215.58315 * 5 3 2 16 16 C 1.51282 * 104.19859 * 24.79840 * 15 5 3 17 17 O 1.21280 * 124.94067 * 163.70981 * 16 15 5 18 18 N 1.34412 * 110.11346 * 343.74821 * 16 15 5 19 19 C 1.46505 * 124.35158 * 179.59157 * 18 16 15 20 20 H 1.09001 * 109.47028 * 185.89563 * 1 2 3 21 21 H 1.08994 * 109.47472 * 305.89800 * 1 2 3 22 22 H 1.09007 * 109.47093 * 65.90110 * 1 2 3 23 23 H 1.08998 * 109.47131 * 119.99897 * 2 1 3 24 24 H 1.08996 * 109.47632 * 240.00552 * 2 1 3 25 25 H 0.96998 * 119.99834 * 179.97438 * 10 9 7 26 26 H 1.09004 * 110.48646 * 143.47432 * 15 5 3 27 27 H 1.09006 * 110.48610 * 266.11568 * 15 5 3 28 28 H 1.08995 * 109.47192 * 272.80066 * 19 18 16 29 29 H 1.09007 * 109.46575 * 32.79916 * 19 18 16 30 30 H 1.09004 * 109.47142 * 152.79528 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6306 1.9868 0.8511 5 6 1.6540 2.1460 -1.3201 6 1 1.5355 1.4231 -2.1272 7 6 0.4025 2.9674 -1.1475 8 1 -0.0938 3.0008 -0.1888 9 6 -0.1093 3.6765 -2.2136 10 7 0.4952 3.6363 -3.3809 11 14 -1.6610 4.6941 -1.9999 12 1 -1.4359 5.7271 -0.9570 13 1 -2.0004 5.3553 -3.2855 14 1 -2.7802 3.8097 -1.5871 15 6 2.8825 3.0525 -1.5651 16 6 4.0068 2.3619 -0.8250 17 8 5.1873 2.5864 -0.9890 18 7 3.5069 1.4626 0.0400 19 6 4.3218 0.6118 0.9109 20 1 -0.3633 -1.0222 0.1056 21 1 -0.3634 0.6025 0.8324 22 1 -0.3634 0.4196 -0.9382 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 0.1350 4.1348 -4.1310 26 1 3.1066 3.1116 -2.6302 27 1 2.7102 4.0476 -1.1547 28 1 4.5953 -0.2982 0.3771 29 1 5.2252 1.1484 1.2010 30 1 3.7511 0.3524 1.8027 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259846798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = -68.056473 kcal Electronic energy + Delta-G solvation = -13029.822363 eV Core-core repulsion = 10823.688723 eV Total energy + Delta-G solvation = -2206.133640 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.32448 -37.99067 -35.19087 -33.76023 -32.66339 -28.39599 -27.44916 -26.16186 -23.30935 -21.47589 -20.20556 -18.59891 -17.33534 -16.98006 -16.46314 -16.00837 -15.32203 -14.66954 -14.51205 -14.15960 -14.10063 -13.36936 -13.11984 -12.87888 -12.70093 -12.53611 -12.46839 -12.37224 -12.04562 -11.70959 -11.26900 -10.94269 -10.72136 -10.37580 -9.57203 -8.11098 -6.20363 1.49071 1.50145 1.56694 1.63095 2.23460 2.47966 3.21819 3.75210 4.03241 4.12569 4.43408 4.50007 4.58454 4.64584 4.75649 4.81979 4.83266 4.92979 5.09944 5.21442 5.41178 5.43024 5.66865 5.70443 5.80412 5.86563 6.14737 6.32738 6.87290 7.26854 7.48106 8.98869 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037591 B = 0.013069 C = 0.010481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.671265 B = 2141.881559 C = 2670.794509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.135 3.865 4 H 0.078 0.922 5 C 0.053 3.947 6 H 0.023 0.977 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.017 3.983 10 N -0.921 5.921 11 Si 0.952 3.048 12 H -0.272 1.272 13 H -0.293 1.293 14 H -0.265 1.265 15 C -0.130 4.130 16 C 0.507 3.493 17 O -0.595 6.595 18 N -0.615 5.615 19 C 0.091 3.909 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 -6.530 8.249 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.033 3.967 4 H 0.096 0.904 5 C 0.034 3.966 6 H 0.041 0.959 7 C -0.551 4.551 8 H 0.089 0.911 9 C -0.183 4.183 10 N -0.559 5.559 11 Si 0.778 3.222 12 H -0.197 1.197 13 H -0.219 1.219 14 H -0.190 1.190 15 C -0.171 4.171 16 C 0.297 3.703 17 O -0.478 6.478 18 N -0.347 5.347 19 C -0.050 4.050 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.202 -6.425 8.067 10.315 hybrid contribution -0.561 0.848 -0.507 1.136 sum -0.763 -5.577 7.560 9.426 Atomic orbital electron populations 1.21607 0.94210 1.01448 1.02344 1.21669 0.97254 0.94068 1.02020 1.22119 0.76885 0.97918 0.99781 0.90385 1.19577 0.92193 0.93031 0.91756 0.95911 1.21204 1.09076 1.27973 0.96863 0.91137 1.25716 0.99856 0.97722 0.94974 1.70078 1.41266 1.42710 1.01887 0.85696 0.80393 0.79141 0.76960 1.19737 1.21949 1.19028 1.22328 0.94998 1.00485 0.99295 1.21578 0.89034 0.79801 0.79903 1.90556 1.19348 1.68703 1.69227 1.48498 1.08651 1.38335 1.39224 1.21693 0.95246 0.93781 0.94273 0.91418 0.92446 0.93591 0.89921 0.93021 0.93025 0.91741 0.90289 0.91997 0.91979 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.28 71.98 0.67 -3.39 16 2 C -0.11 -3.33 5.21 30.60 0.16 -3.17 16 3 C 0.14 4.95 2.95 45.45 0.13 5.08 16 4 H 0.08 2.80 7.74 -2.39 -0.02 2.79 16 5 C 0.05 2.47 1.91 -10.49 -0.02 2.45 16 6 H 0.02 1.17 7.87 -2.39 -0.02 1.15 16 7 C -0.51 -25.13 7.23 25.60 0.19 -24.94 16 8 H 0.07 3.27 7.60 -2.91 -0.02 3.25 16 9 C 0.02 0.87 5.37 84.66 0.45 1.33 16 10 N -0.92 -51.19 12.84 21.45 0.28 -50.92 16 11 Si 0.95 40.89 29.54 68.60 2.03 42.92 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 15 C -0.13 -6.31 5.81 30.59 0.18 -6.13 16 16 C 0.51 23.04 8.02 87.90 0.71 23.75 16 17 O -0.60 -30.04 17.63 -3.03 -0.05 -30.09 16 18 N -0.62 -22.75 3.18 -818.87 -2.61 -25.36 16 19 C 0.09 2.48 10.05 127.77 1.28 3.77 16 20 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.04 1.65 7.03 -2.38 -0.02 1.63 16 23 H 0.08 1.93 7.36 -2.39 -0.02 1.91 16 24 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 25 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.06 3.40 8.14 -2.39 -0.02 3.38 16 27 H 0.08 3.94 7.89 -2.38 -0.02 3.92 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.76 7.99 -2.38 -0.02 1.74 16 30 H 0.10 2.06 7.75 -2.38 -0.02 2.04 16 Total: -1.00 -60.84 250.52 4.49 -56.34 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.10 Total: 8.38 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 3.75 Total: -1.27 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -2.33 Total: -76.28 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -60.84 4.49 -56.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259846798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.713 kcal (2) G-P(sol) polarization free energy of solvation -60.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds