Wall clock time and date at job start Mon Mar 30 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 O 1.21277 * 120.00304 * 239.99974 * 4 2 1 6 6 N 1.34778 * 119.99637 * 60.00346 * 4 2 1 7 7 C 1.47067 * 136.05923 * 359.62777 * 6 4 2 8 8 C 1.53755 * 87.89015 * 152.96288 * 7 6 4 9 9 C 1.47070 * 136.05620 * 179.97438 * 6 4 2 10 10 H 1.09004 * 113.46619 * 92.30514 * 9 6 4 11 11 C 1.50699 * 113.46825 * 321.92463 * 9 6 4 12 12 H 1.08001 * 119.99621 * 359.97438 * 11 9 6 13 13 C 1.37874 * 120.00012 * 180.02562 * 11 9 6 14 14 N 1.31517 * 119.99860 * 180.02562 * 13 11 9 15 15 Si 1.86804 * 120.00047 * 359.97438 * 13 11 9 16 16 H 1.48493 * 109.46902 * 90.00492 * 15 13 11 17 17 H 1.48500 * 109.47135 * 210.00425 * 15 13 11 18 18 H 1.48497 * 109.47024 * 330.00370 * 15 13 11 19 19 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 24 24 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 25 25 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 26 26 H 1.09000 * 113.46524 * 267.69478 * 7 6 4 27 27 H 1.09000 * 113.46810 * 38.13597 * 7 6 4 28 28 H 1.09003 * 114.39598 * 272.68033 * 8 7 6 29 29 H 1.08997 * 114.27176 * 139.78881 * 8 7 6 30 30 H 0.97001 * 119.99865 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -0.1210 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 0.9105 -3.0213 0.7455 8 6 1.8016 -4.0864 1.4054 9 6 1.9866 -3.0062 2.4799 10 1 1.2317 -3.0415 3.2654 11 6 3.3901 -2.9331 3.0237 12 1 4.0774 -2.1903 2.6463 13 6 3.7971 -3.8150 4.0022 14 7 5.0219 -3.7508 4.4771 15 14 2.6085 -5.1001 4.6544 16 1 2.7220 -6.3372 3.8410 17 1 2.9381 -5.4062 6.0697 18 1 1.2207 -4.5783 4.5710 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 -0.1282 -3.0606 1.0735 27 1 1.0094 -2.9819 -0.3393 28 1 2.7085 -4.3225 0.8487 29 1 1.2641 -4.9705 1.7482 30 1 5.3081 -4.3710 5.1658 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892291.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:50 Heat of formation + Delta-G solvation = -7.157765 kcal Electronic energy + Delta-G solvation = -12882.196492 eV Core-core repulsion = 10678.703618 eV Total energy + Delta-G solvation = -2203.492874 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56634 -37.18792 -33.98187 -32.39587 -29.08470 -27.24578 -26.82498 -23.26820 -22.51411 -20.33729 -17.95144 -17.13635 -16.26832 -15.18718 -14.98043 -14.36673 -13.40710 -13.07376 -13.00574 -12.53958 -12.31488 -12.10208 -11.73487 -11.66986 -11.46103 -10.96987 -10.86119 -10.81218 -10.62909 -10.25573 -9.79723 -9.23887 -8.71852 -8.50834 -7.68514 -6.05573 -4.05243 3.25707 3.32075 3.33586 3.48837 3.73789 4.38784 4.91868 5.10782 5.16239 5.24054 5.38020 5.58279 5.71221 5.74382 5.79606 5.91482 5.99682 6.05095 6.27333 6.34830 6.45483 6.48081 6.52416 6.79105 7.18402 7.57349 8.53693 8.74617 9.08457 9.10075 9.54715 11.07558 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050449 B = 0.011405 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.885850 B = 2454.465825 C = 2829.477187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.535 3.465 5 O -0.532 6.532 6 N -0.633 5.633 7 C 0.096 3.904 8 C -0.166 4.166 9 C 0.231 3.769 10 H 0.050 0.950 11 C -0.509 4.509 12 H 0.086 0.914 13 C 0.074 3.926 14 N -0.894 5.894 15 Si 0.872 3.128 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.264 1.264 19 H 0.057 0.943 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 1.851 -9.611 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.187 4.187 4 C 0.324 3.676 5 O -0.408 6.408 6 N -0.368 5.368 7 C -0.028 4.028 8 C -0.204 4.204 9 C 0.129 3.871 10 H 0.068 0.932 11 C -0.547 4.547 12 H 0.104 0.896 13 C -0.129 4.129 14 N -0.532 5.532 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.189 1.189 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.106 0.894 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.119 2.330 -9.069 13.786 hybrid contribution -0.607 -0.816 0.382 1.086 sum -10.725 1.514 -8.686 13.885 Atomic orbital electron populations 1.21771 0.93721 1.02307 1.02064 1.21253 0.97022 0.97615 0.97513 1.21575 1.01885 0.93876 1.01352 1.19935 0.80761 0.79651 0.87280 1.90700 1.38025 1.64518 1.47542 1.49853 1.50115 1.09209 1.27592 1.22925 0.95470 0.87233 0.97180 1.23788 0.99369 0.96436 1.00846 1.20689 0.98138 0.80150 0.88109 0.93220 1.21083 0.94948 1.17826 1.20843 0.89640 1.24890 0.95114 0.97328 0.95544 1.69911 1.17231 1.37461 1.28592 0.86931 0.82061 0.82415 0.78719 1.19857 1.21176 1.18921 0.92390 0.92131 0.92172 0.89406 0.92122 0.91986 0.92728 0.91080 0.91741 0.88957 0.91543 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.08 37.16 0.34 -1.43 16 2 C -0.11 -1.75 3.14 -91.77 -0.29 -2.04 16 3 C -0.13 -1.88 8.48 37.16 0.32 -1.57 16 4 C 0.54 11.61 7.30 -10.99 -0.08 11.53 16 5 O -0.53 -14.17 15.74 5.56 0.09 -14.08 16 6 N -0.63 -13.50 3.51 -178.64 -0.63 -14.13 16 7 C 0.10 1.55 6.71 -8.37 -0.06 1.49 16 8 C -0.17 -3.18 7.23 -26.09 -0.19 -3.37 16 9 C 0.23 5.54 3.07 -73.55 -0.23 5.31 16 10 H 0.05 1.21 6.62 -51.93 -0.34 0.86 16 11 C -0.51 -14.98 9.09 -34.44 -0.31 -15.29 16 12 H 0.09 2.90 7.47 -52.49 -0.39 2.51 16 13 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 14 N -0.89 -28.00 13.96 55.43 0.77 -27.23 16 15 Si 0.87 21.00 26.92 -169.99 -4.58 16.43 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.26 -6.00 6.27 56.52 0.35 -5.65 16 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.72 6.33 -51.93 -0.33 0.39 16 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 24 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.99 8.10 -51.93 -0.42 0.56 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.84 8.11 -51.93 -0.42 1.42 16 29 H 0.07 1.14 7.90 -51.93 -0.41 0.73 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 249.91 15.07 3.77 3.77 Total: -1.00 -34.11 249.91 -5.62 -39.74 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.45 Total: -1.19 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.60 Total: -3.31 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.15 Total: -41.35 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.58 Total: 16.43 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -34.11 -5.62 -39.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892291.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.578 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds