Wall clock time and date at job start Mon Mar 30 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 O 1.21277 * 120.00304 * 239.99974 * 4 2 1 6 6 N 1.34778 * 119.99637 * 60.00346 * 4 2 1 7 7 C 1.47067 * 136.05923 * 359.62777 * 6 4 2 8 8 C 1.53755 * 87.89015 * 152.96288 * 7 6 4 9 9 C 1.47070 * 136.05620 * 179.97438 * 6 4 2 10 10 H 1.09004 * 113.46619 * 92.30514 * 9 6 4 11 11 C 1.50699 * 113.46825 * 321.92463 * 9 6 4 12 12 H 1.08001 * 119.99621 * 359.97438 * 11 9 6 13 13 C 1.37874 * 120.00012 * 180.02562 * 11 9 6 14 14 N 1.31517 * 119.99860 * 180.02562 * 13 11 9 15 15 Si 1.86804 * 120.00047 * 359.97438 * 13 11 9 16 16 H 1.48493 * 109.46902 * 90.00492 * 15 13 11 17 17 H 1.48500 * 109.47135 * 210.00425 * 15 13 11 18 18 H 1.48497 * 109.47024 * 330.00370 * 15 13 11 19 19 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 24 24 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 25 25 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 26 26 H 1.09000 * 113.46524 * 267.69478 * 7 6 4 27 27 H 1.09000 * 113.46810 * 38.13597 * 7 6 4 28 28 H 1.09003 * 114.39598 * 272.68033 * 8 7 6 29 29 H 1.08997 * 114.27176 * 139.78881 * 8 7 6 30 30 H 0.97001 * 119.99865 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -0.1210 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 0.9105 -3.0213 0.7455 8 6 1.8016 -4.0864 1.4054 9 6 1.9866 -3.0062 2.4799 10 1 1.2317 -3.0415 3.2654 11 6 3.3901 -2.9331 3.0237 12 1 4.0774 -2.1903 2.6463 13 6 3.7971 -3.8150 4.0022 14 7 5.0219 -3.7508 4.4771 15 14 2.6085 -5.1001 4.6544 16 1 2.7220 -6.3372 3.8410 17 1 2.9381 -5.4062 6.0697 18 1 1.2207 -4.5783 4.5710 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 -0.1282 -3.0606 1.0735 27 1 1.0094 -2.9819 -0.3393 28 1 2.7085 -4.3225 0.8487 29 1 1.2641 -4.9705 1.7482 30 1 5.3081 -4.3710 5.1658 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259892291.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:50 Heat of formation + Delta-G solvation = -32.978362 kcal Electronic energy + Delta-G solvation = -12883.316157 eV Core-core repulsion = 10678.703618 eV Total energy + Delta-G solvation = -2204.612539 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.18587 -38.84625 -35.36226 -34.58668 -30.74998 -29.14053 -27.92748 -24.78865 -24.20838 -21.81098 -19.56586 -19.21935 -17.84387 -16.88931 -16.64999 -15.89223 -15.10868 -14.80415 -14.43566 -14.14288 -13.85923 -13.37719 -13.30232 -13.03463 -12.88300 -12.65402 -12.33789 -12.08430 -12.02552 -11.89086 -11.79952 -11.17756 -10.74588 -10.37217 -9.39467 -8.30276 -6.37735 1.33804 1.40443 1.48972 1.86856 2.19210 2.34675 3.03304 3.61178 3.81377 3.99416 4.09156 4.32738 4.46139 4.57401 4.66036 4.76101 4.81803 4.88752 4.92954 4.99322 5.06653 5.16746 5.31472 5.36519 5.37701 5.61207 6.31502 6.66365 7.10359 7.30127 7.46501 8.88231 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050449 B = 0.011405 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.885850 B = 2454.465825 C = 2829.477187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C -0.128 4.128 4 C 0.516 3.484 5 O -0.604 6.604 6 N -0.645 5.645 7 C 0.111 3.889 8 C -0.154 4.154 9 C 0.209 3.791 10 H 0.053 0.947 11 C -0.523 4.523 12 H 0.012 0.988 13 C 0.003 3.997 14 N -0.956 5.956 15 Si 0.956 3.044 16 H -0.245 1.245 17 H -0.290 1.290 18 H -0.235 1.235 19 H 0.044 0.956 20 H 0.097 0.903 21 H 0.072 0.928 22 H 0.111 0.889 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.556 0.205 -11.655 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 C -0.186 4.186 4 C 0.308 3.692 5 O -0.485 6.485 6 N -0.378 5.378 7 C -0.010 4.010 8 C -0.193 4.193 9 C 0.106 3.894 10 H 0.071 0.929 11 C -0.561 4.561 12 H 0.031 0.969 13 C -0.193 4.193 14 N -0.596 5.596 15 Si 0.777 3.223 16 H -0.169 1.169 17 H -0.216 1.216 18 H -0.159 1.159 19 H 0.064 0.936 20 H 0.115 0.885 21 H 0.091 0.909 22 H 0.129 0.871 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.024 0.671 -11.178 17.946 hybrid contribution 0.701 -0.208 1.009 1.246 sum -13.322 0.463 -10.169 16.766 Atomic orbital electron populations 1.21776 0.90562 1.03523 1.03273 1.21318 0.99405 0.97015 0.94575 1.21598 1.00356 0.94001 1.02600 1.21282 0.79641 0.79760 0.88553 1.90659 1.41160 1.66255 1.50475 1.50076 1.50621 1.09553 1.27595 1.23190 0.95962 0.82757 0.99108 1.23625 1.00093 0.97064 0.98489 1.20808 0.94425 0.84064 0.90102 0.92930 1.21253 0.97084 1.16191 1.21602 0.96943 1.26070 0.97367 1.00322 0.95563 1.70123 1.20288 1.39326 1.29834 0.85621 0.79948 0.79147 0.77606 1.16879 1.21635 1.15857 0.93650 0.88453 0.90946 0.87067 0.93824 0.94529 0.88356 0.87223 0.87886 0.90491 0.88258 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.08 71.98 0.65 -2.13 16 2 C -0.10 -2.95 3.14 -11.54 -0.04 -2.99 16 3 C -0.13 -3.62 8.48 71.98 0.61 -3.01 16 4 C 0.52 22.71 7.30 87.66 0.64 23.35 16 5 O -0.60 -34.47 15.74 -3.02 -0.05 -34.52 16 6 N -0.64 -26.82 3.51 -837.49 -2.94 -29.76 16 7 C 0.11 3.04 6.71 83.27 0.56 3.60 16 8 C -0.15 -5.40 7.23 31.01 0.22 -5.17 16 9 C 0.21 9.89 3.07 41.04 0.13 10.02 16 10 H 0.05 2.45 6.62 -2.39 -0.02 2.44 16 11 C -0.52 -32.40 9.09 25.60 0.23 -32.16 16 12 H 0.01 0.91 7.47 -2.91 -0.02 0.89 16 13 C 0.00 0.21 5.47 84.65 0.46 0.67 16 14 N -0.96 -63.16 13.96 21.45 0.30 -62.86 16 15 Si 0.96 43.10 26.92 68.60 1.85 44.95 16 16 H -0.24 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.24 -9.43 6.27 99.48 0.62 -8.81 16 19 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 20 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.07 1.33 6.33 -2.39 -0.02 1.32 16 22 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 23 H 0.04 1.35 8.10 -2.39 -0.02 1.34 16 24 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 25 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.11 2.28 8.10 -2.39 -0.02 2.26 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 29 H 0.10 2.85 7.90 -2.39 -0.02 2.83 16 30 H 0.27 16.27 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -84.52 249.91 3.65 -80.86 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.02 Total: 9.16 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 3.47 Total: -7.83 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -2.64 Total: -92.62 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.05 Total: -34.52 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.85 Total: 44.95 kcal Total: -84.52 3.65 -80.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892291.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.884 kcal (2) G-P(sol) polarization free energy of solvation -84.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds