Wall clock time and date at job start Mon Mar 30 2020 02:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 O 1.21277 * 119.99770 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.47032 * 125.64816 * 0.02929 * 5 3 2 7 7 C 1.54324 * 107.27065 * 181.01989 * 6 5 3 8 8 C 1.55154 * 102.94210 * 22.19339 * 7 6 5 9 9 H 1.09005 * 111.00912 * 82.60355 * 8 7 6 10 10 C 1.50700 * 111.00600 * 206.42169 * 8 7 6 11 11 H 1.08005 * 119.99815 * 118.53985 * 10 8 7 12 12 C 1.37868 * 119.99910 * 298.55144 * 10 8 7 13 13 N 1.31513 * 120.00189 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 120.00064 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47234 * 89.99357 * 14 12 10 16 16 H 1.48497 * 109.47237 * 209.99618 * 14 12 10 17 17 H 1.48497 * 109.46886 * 329.99640 * 14 12 10 18 18 C 1.47417 * 125.65136 * 179.71719 * 5 3 2 19 19 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 24 24 H 1.08997 * 109.87908 * 300.44182 * 6 5 3 25 25 H 1.09001 * 109.88351 * 61.44959 * 6 5 3 26 26 H 1.09002 * 110.71896 * 140.55145 * 7 6 5 27 27 H 1.08998 * 110.72183 * 263.65120 * 7 6 5 28 28 H 0.96999 * 120.00085 * 180.02562 * 13 12 10 29 29 H 1.08999 * 110.36944 * 274.75205 * 18 5 3 30 30 H 1.09001 * 110.36583 * 37.07055 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4182 0.6491 0.0005 7 6 5.7690 1.3949 0.0274 8 6 5.3891 2.7809 0.6122 9 1 5.3408 2.7460 1.7006 10 6 6.3522 3.8442 0.1510 11 1 5.9957 4.6779 -0.4359 12 6 7.6884 3.7528 0.4781 13 7 8.1224 2.7378 1.1930 14 14 8.8825 5.0704 -0.0942 15 1 8.9611 6.1449 0.9279 16 1 10.2272 4.4704 -0.2860 17 1 8.4083 5.6436 -1.3794 18 6 3.9832 3.0019 -0.0053 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 4.3257 0.0175 0.8840 25 1 4.3468 0.0393 -0.9001 26 1 6.4789 0.8836 0.6776 27 1 6.1739 1.4960 -0.9795 28 1 9.0624 2.6737 1.4235 29 1 4.0690 3.3762 -1.0254 30 1 3.4052 3.6946 0.6064 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259955858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:06 Heat of formation + Delta-G solvation = -52.396845 kcal Electronic energy + Delta-G solvation = -12600.057340 eV Core-core repulsion = 10394.602752 eV Total energy + Delta-G solvation = -2205.454588 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38083 -36.77112 -33.08906 -32.48457 -30.21163 -28.37855 -25.49885 -23.64781 -21.86294 -19.74539 -18.53111 -16.85785 -16.37480 -15.43103 -14.86896 -14.56735 -14.13785 -13.05713 -12.76718 -12.57340 -12.13093 -12.01744 -11.57839 -11.44966 -11.19713 -11.02959 -10.98023 -10.78751 -10.48145 -9.79672 -9.47376 -9.26575 -8.98476 -8.49012 -7.96940 -6.11894 -4.15598 3.10743 3.26899 3.33787 3.37115 3.63838 4.37845 4.93362 5.21491 5.23305 5.24240 5.63155 5.69048 5.82586 5.85230 6.02913 6.06345 6.25864 6.30789 6.39978 6.63049 6.83380 7.01397 7.12606 7.47495 7.70222 7.88238 8.17555 8.28112 8.67929 8.86139 9.49637 10.97927 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.083644 B = 0.008006 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.671926 B = 3496.492198 C = 3724.573607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.517 3.483 4 O -0.560 6.560 5 N -0.614 5.614 6 C 0.095 3.905 7 C -0.109 4.109 8 C 0.045 3.955 9 H 0.038 0.962 10 C -0.516 4.516 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.107 3.893 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.059 0.941 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 -6.800 -2.047 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.305 3.695 4 O -0.439 6.439 5 N -0.346 5.346 6 C -0.028 4.028 7 C -0.148 4.148 8 C 0.026 3.974 9 H 0.056 0.944 10 C -0.554 4.554 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.015 4.015 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.991 -6.413 -1.971 9.689 hybrid contribution 0.877 0.539 -0.281 1.067 sum -6.114 -5.874 -2.252 8.772 Atomic orbital electron populations 1.21509 0.93508 1.00977 1.03175 1.21590 0.97993 0.94525 1.03909 1.20352 0.81043 0.91465 0.76602 1.90643 1.54732 1.46840 1.51716 1.48810 1.04726 1.09908 1.71181 1.22277 0.89715 0.91239 0.99594 1.22599 0.92279 0.98087 1.01814 1.19875 0.88652 0.92960 0.95903 0.94363 1.20967 0.92339 1.07818 1.34276 0.92204 1.24951 0.98281 0.95707 0.94772 1.69942 1.15367 1.29751 1.37661 0.86548 0.80244 0.81745 0.79216 1.20596 1.21203 1.19822 1.22628 0.95550 0.82703 1.00605 0.92135 0.92506 0.92192 0.89332 0.89424 0.92609 0.92941 0.89903 0.92151 0.92870 0.92318 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.20 37.16 0.34 -1.30 16 2 C -0.14 -1.88 5.61 -27.88 -0.16 -2.04 16 3 C 0.52 9.67 7.85 -10.98 -0.09 9.58 16 4 O -0.56 -12.34 16.24 5.56 0.09 -12.25 16 5 N -0.61 -12.04 3.32 -170.38 -0.57 -12.61 16 6 C 0.09 1.67 6.49 -3.06 -0.02 1.65 16 7 C -0.11 -2.36 5.64 -24.90 -0.14 -2.50 16 8 C 0.05 1.10 2.98 -89.50 -0.27 0.83 16 9 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.52 -13.70 8.55 -34.44 -0.29 -14.00 16 11 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 12 C 0.07 1.74 5.34 -17.82 -0.10 1.64 16 13 N -0.89 -24.40 12.13 55.43 0.67 -23.73 16 14 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.11 2.36 6.35 -2.41 -0.02 2.34 16 19 H 0.06 0.80 8.10 -51.93 -0.42 0.37 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 22 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.89 7.55 -51.93 -0.39 1.50 16 27 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 30 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 LS Contribution 253.35 15.07 3.82 3.82 Total: -1.00 -29.21 253.35 -6.30 -35.52 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.56 Total: -2.62 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.73 Total: -3.79 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.11 Total: -36.33 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.21 -6.30 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.879 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds