Wall clock time and date at job start Mon Mar 30 2020 02:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 O 1.21277 * 119.99770 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.47032 * 125.64816 * 0.02929 * 5 3 2 7 7 C 1.54324 * 107.27065 * 181.01989 * 6 5 3 8 8 C 1.55154 * 102.94210 * 22.19339 * 7 6 5 9 9 H 1.09005 * 111.00912 * 82.60355 * 8 7 6 10 10 C 1.50700 * 111.00600 * 206.42169 * 8 7 6 11 11 H 1.08005 * 119.99815 * 118.53985 * 10 8 7 12 12 C 1.37868 * 119.99910 * 298.55144 * 10 8 7 13 13 N 1.31513 * 120.00189 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 120.00064 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47234 * 89.99357 * 14 12 10 16 16 H 1.48497 * 109.47237 * 209.99618 * 14 12 10 17 17 H 1.48497 * 109.46886 * 329.99640 * 14 12 10 18 18 C 1.47417 * 125.65136 * 179.71719 * 5 3 2 19 19 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 24 24 H 1.08997 * 109.87908 * 300.44182 * 6 5 3 25 25 H 1.09001 * 109.88351 * 61.44959 * 6 5 3 26 26 H 1.09002 * 110.71896 * 140.55145 * 7 6 5 27 27 H 1.08998 * 110.72183 * 263.65120 * 7 6 5 28 28 H 0.96999 * 120.00085 * 180.02562 * 13 12 10 29 29 H 1.08999 * 110.36944 * 274.75205 * 18 5 3 30 30 H 1.09001 * 110.36583 * 37.07055 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4182 0.6491 0.0005 7 6 5.7690 1.3949 0.0274 8 6 5.3891 2.7809 0.6122 9 1 5.3408 2.7460 1.7006 10 6 6.3522 3.8442 0.1510 11 1 5.9957 4.6779 -0.4359 12 6 7.6884 3.7528 0.4781 13 7 8.1224 2.7378 1.1930 14 14 8.8825 5.0704 -0.0942 15 1 8.9611 6.1449 0.9279 16 1 10.2272 4.4704 -0.2860 17 1 8.4083 5.6436 -1.3794 18 6 3.9832 3.0019 -0.0053 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 4.3257 0.0175 0.8840 25 1 4.3468 0.0393 -0.9001 26 1 6.4789 0.8836 0.6776 27 1 6.1739 1.4960 -0.9795 28 1 9.0624 2.6737 1.4235 29 1 4.0690 3.3762 -1.0254 30 1 3.4052 3.6946 0.6064 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:06 Heat of formation + Delta-G solvation = -70.472886 kcal Electronic energy + Delta-G solvation = -12600.841176 eV Core-core repulsion = 10394.602752 eV Total energy + Delta-G solvation = -2206.238424 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91783 -38.42868 -34.98511 -33.70287 -31.94654 -30.05485 -27.25019 -25.12933 -23.33514 -21.58751 -20.00613 -18.60810 -18.00065 -16.97603 -16.51460 -16.32895 -15.59206 -14.54724 -14.33522 -14.27851 -13.61936 -13.35648 -13.14819 -13.01133 -12.84151 -12.66594 -12.50965 -12.28721 -12.02282 -11.58969 -11.33730 -10.96189 -10.80246 -10.52020 -9.55399 -8.16630 -6.26829 1.43059 1.44656 1.54314 1.67090 2.15409 2.44435 3.15348 3.65389 4.07813 4.18844 4.23861 4.35667 4.44496 4.50229 4.65218 4.77989 4.83806 4.99582 5.07158 5.09563 5.27662 5.33364 5.42938 5.58093 5.78136 5.86821 6.26540 6.69648 6.79101 7.20100 7.41336 8.92548 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.083644 B = 0.008006 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.671926 B = 3496.492198 C = 3724.573607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.130 4.130 3 C 0.508 3.492 4 O -0.601 6.601 5 N -0.619 5.619 6 C 0.104 3.896 7 C -0.101 4.101 8 C 0.038 3.962 9 H 0.009 0.991 10 C -0.538 4.538 11 H 0.053 0.947 12 C 0.022 3.978 13 N -0.912 5.912 14 Si 0.956 3.044 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.270 1.270 18 C 0.116 3.884 19 H 0.044 0.956 20 H 0.092 0.908 21 H 0.046 0.954 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -8.366 -2.673 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.170 4.170 3 C 0.300 3.700 4 O -0.483 6.483 5 N -0.352 5.352 6 C -0.018 4.018 7 C -0.140 4.140 8 C 0.019 3.981 9 H 0.027 0.973 10 C -0.576 4.576 11 H 0.071 0.929 12 C -0.178 4.178 13 N -0.551 5.551 14 Si 0.781 3.219 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.007 4.007 19 H 0.063 0.937 20 H 0.111 0.889 21 H 0.065 0.935 22 H 0.130 0.870 23 H 0.134 0.866 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.210 -8.002 -2.599 11.080 hybrid contribution 0.920 1.047 -0.057 1.395 sum -6.290 -6.955 -2.657 9.746 Atomic orbital electron populations 1.21530 0.92818 1.02848 1.01825 1.21685 0.98455 0.90533 1.06300 1.21455 0.80016 0.93523 0.75034 1.90624 1.55549 1.48783 1.53382 1.48910 1.05727 1.08985 1.71541 1.22278 0.86448 0.90461 1.02586 1.22370 0.94435 0.96760 1.00396 1.19779 0.89664 0.94376 0.94267 0.97265 1.21263 0.93339 1.08459 1.34539 0.92895 1.25655 0.99715 0.97639 0.94829 1.70034 1.15758 1.31015 1.38277 0.85589 0.78244 0.79256 0.78765 1.20383 1.20510 1.19441 1.22277 0.94477 0.84370 0.99562 0.93680 0.88923 0.93481 0.86951 0.86595 0.90127 0.89322 0.91399 0.93175 0.92705 0.92934 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.20 71.98 0.66 -2.20 16 2 C -0.13 -3.00 5.61 29.85 0.17 -2.83 16 3 C 0.51 18.16 7.85 87.66 0.69 18.85 16 4 O -0.60 -26.41 16.24 -3.02 -0.05 -26.46 16 5 N -0.62 -23.45 3.32 -811.34 -2.70 -26.15 16 6 C 0.10 3.39 6.49 86.73 0.56 3.95 16 7 C -0.10 -4.31 5.64 31.78 0.18 -4.13 16 8 C 0.04 1.89 2.98 -10.07 -0.03 1.86 16 9 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 10 C -0.54 -29.14 8.55 25.60 0.22 -28.92 16 11 H 0.05 2.86 7.79 -2.91 -0.02 2.84 16 12 C 0.02 1.16 5.34 84.65 0.45 1.61 16 13 N -0.91 -50.40 12.13 21.44 0.26 -50.14 16 14 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 C 0.12 5.21 6.35 86.93 0.55 5.76 16 19 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 22 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.07 3.08 7.55 -2.39 -0.02 3.06 16 27 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 28 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.05 2.39 8.03 -2.39 -0.02 2.37 16 30 H 0.04 2.06 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -63.98 253.35 4.09 -59.89 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.10 Total: 4.39 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 3.45 Total: -6.05 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.44 Total: -76.29 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.98 4.09 -59.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.582 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds