Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47707 * 2 1 4 4 O 1.21281 * 119.99784 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00031 * 180.02562 * 3 2 1 6 6 C 1.47418 * 125.65190 * 0.03822 * 5 3 2 7 7 C 1.55118 * 104.94633 * 203.97103 * 6 5 3 8 8 C 1.55156 * 101.48465 * 323.22026 * 7 6 5 9 9 H 1.09001 * 110.72351 * 276.82973 * 8 7 6 10 10 C 1.50698 * 110.72453 * 153.73543 * 8 7 6 11 11 H 1.08005 * 119.99819 * 243.84559 * 10 8 7 12 12 C 1.37875 * 120.00046 * 63.83901 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47020 * 125.64513 * 179.97438 * 5 3 2 19 19 H 1.09000 * 109.46640 * 300.00803 * 1 2 3 20 20 H 1.09002 * 109.46735 * 60.00170 * 1 2 3 21 21 H 1.08992 * 109.47301 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47114 * 239.99104 * 2 1 3 23 23 H 1.09007 * 109.47203 * 119.99912 * 2 1 3 24 24 H 1.09002 * 110.36707 * 322.93012 * 6 5 3 25 25 H 1.09000 * 110.37163 * 85.14489 * 6 5 3 26 26 H 1.08999 * 111.16707 * 205.13512 * 7 6 5 27 27 H 1.09000 * 110.93950 * 81.21176 * 7 6 5 28 28 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 29 29 H 1.09008 * 109.88385 * 59.56039 * 18 5 3 30 30 H 1.08997 * 109.88689 * 298.39363 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2444 2.3426 -0.0005 5 7 3.3575 1.6669 -0.0005 6 6 4.4211 0.6461 -0.0019 7 6 5.6584 1.3566 0.6069 8 6 5.5103 2.7873 0.0251 9 1 5.9237 2.8388 -0.9822 10 6 6.1731 3.7995 0.9236 11 1 5.5803 4.5609 1.4088 12 6 7.5361 3.7535 1.1263 13 7 8.2579 2.8267 0.5352 14 14 8.3574 5.0078 2.2405 15 1 9.8180 4.7439 2.2908 16 1 7.7877 4.9034 3.6079 17 1 8.1197 6.3736 1.7083 18 6 3.9817 2.9980 -0.0011 19 1 -0.3632 0.5140 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5140 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 4.1305 -0.2054 0.6135 25 1 4.6344 0.3218 -1.0205 26 1 6.5847 0.8917 0.2696 27 1 5.6035 1.3698 1.6954 28 1 7.8313 2.1751 -0.0432 29 1 3.6692 3.5544 0.8826 30 1 3.6975 3.5404 -0.9029 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955871.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = -73.789638 kcal Electronic energy + Delta-G solvation = -12651.763501 eV Core-core repulsion = 10445.381252 eV Total energy + Delta-G solvation = -2206.382249 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.04141 -38.65567 -35.29364 -33.75219 -31.79043 -30.20241 -26.90440 -25.24853 -23.59034 -21.78198 -20.08370 -19.11061 -18.01282 -17.40729 -16.50926 -15.96503 -15.65138 -14.59026 -14.51447 -14.18412 -13.82121 -13.73649 -13.23599 -13.10161 -12.75136 -12.60138 -12.47416 -12.07200 -11.94464 -11.74069 -11.65069 -10.92919 -10.63316 -10.50633 -9.68268 -8.60743 -6.34937 1.55222 1.59207 1.61204 1.81311 2.04890 2.56853 3.17277 3.54143 3.88374 4.06921 4.17746 4.22791 4.29677 4.34016 4.52693 4.62013 4.73782 4.90866 4.96054 5.01754 5.09793 5.17986 5.25435 5.34367 5.56592 6.02904 6.16833 6.57602 6.65201 7.11789 7.42549 8.78954 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.073985 B = 0.008224 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.363866 B = 3404.026822 C = 3621.058082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.130 4.130 3 C 0.509 3.491 4 O -0.599 6.599 5 N -0.619 5.619 6 C 0.106 3.894 7 C -0.118 4.118 8 C 0.019 3.981 9 H 0.014 0.986 10 C -0.614 4.614 11 H 0.040 0.960 12 C -0.020 4.020 13 N -0.930 5.930 14 Si 1.111 2.889 15 H -0.281 1.281 16 H -0.274 1.274 17 H -0.276 1.276 18 C 0.127 3.873 19 H 0.044 0.956 20 H 0.046 0.954 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.266 0.734 29 H 0.039 0.961 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 -8.728 -0.469 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.300 3.700 4 O -0.481 6.481 5 N -0.351 5.351 6 C -0.016 4.016 7 C -0.157 4.157 8 C 0.000 4.000 9 H 0.032 0.968 10 C -0.652 4.652 11 H 0.058 0.942 12 C -0.219 4.219 13 N -0.567 5.567 14 Si 0.933 3.067 15 H -0.206 1.206 16 H -0.200 1.200 17 H -0.202 1.202 18 C 0.004 3.996 19 H 0.063 0.937 20 H 0.065 0.935 21 H 0.112 0.888 22 H 0.136 0.864 23 H 0.133 0.867 24 H 0.123 0.877 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.150 -7.814 0.132 10.592 hybrid contribution -1.284 0.022 -0.747 1.486 sum -8.433 -7.792 -0.615 11.498 Atomic orbital electron populations 1.21536 0.92770 1.02951 1.01825 1.21700 0.98511 0.90236 1.06447 1.21538 0.79851 0.93668 0.74926 1.90633 1.55568 1.48842 1.53102 1.48873 1.05858 1.08595 1.71810 1.22559 0.86125 0.90941 1.01989 1.22822 0.96719 0.96576 0.99539 1.19824 0.89885 0.94644 0.95652 0.96818 1.22197 0.95535 1.15916 1.31522 0.94207 1.27051 0.95117 1.00708 0.99073 1.70917 1.39404 1.16696 1.29726 0.82991 0.75379 0.73591 0.74730 1.20573 1.19986 1.20153 1.21806 0.94258 0.84657 0.98920 0.93698 0.93504 0.88776 0.86442 0.86698 0.87652 0.89913 0.91191 0.93102 0.92231 0.94300 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.20 71.98 0.66 -2.14 16 2 C -0.13 -2.87 5.42 29.85 0.16 -2.71 16 3 C 0.51 17.96 7.85 87.66 0.69 18.64 16 4 O -0.60 -26.30 16.31 -3.03 -0.05 -26.35 16 5 N -0.62 -23.17 3.33 -811.38 -2.70 -25.87 16 6 C 0.11 3.29 6.69 86.93 0.58 3.87 16 7 C -0.12 -4.90 5.79 32.06 0.19 -4.72 16 8 C 0.02 0.93 2.46 -10.35 -0.03 0.91 16 9 H 0.01 0.72 8.00 -2.39 -0.02 0.70 16 10 C -0.61 -34.08 8.49 25.60 0.22 -33.86 16 11 H 0.04 2.25 7.55 -2.91 -0.02 2.23 16 12 C -0.02 -1.09 5.35 84.65 0.45 -0.64 16 13 N -0.93 -53.53 13.45 21.45 0.29 -53.25 16 14 Si 1.11 49.24 29.90 68.60 2.05 51.29 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 18 C 0.13 5.77 6.46 86.73 0.56 6.33 16 19 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 20 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 21 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 22 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.11 2.04 7.85 -2.38 -0.02 2.02 16 24 H 0.11 2.47 7.48 -2.39 -0.02 2.46 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.07 2.96 6.61 -2.39 -0.02 2.94 16 27 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 28 H 0.27 15.01 5.45 -92.71 -0.51 14.50 16 29 H 0.04 1.92 7.64 -2.38 -0.02 1.90 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.71 249.40 4.44 -63.27 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.37 Total: 5.22 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.48 Total: -14.31 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.41 Total: -79.11 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Total: -67.71 4.44 -63.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955871.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.520 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds