Wall clock time and date at job start Mon Mar 30 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 N 1.46506 * 109.46987 * 119.99924 * 2 1 3 5 5 C 1.46760 * 124.34669 * 119.99934 * 4 2 1 6 6 C 1.54480 * 105.54782 * 162.91674 * 5 4 2 7 7 H 1.09000 * 110.97126 * 267.34164 * 6 5 4 8 8 C 1.50706 * 110.97017 * 143.57833 * 6 5 4 9 9 H 1.08002 * 119.99744 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99770 * 180.02562 * 8 6 5 11 11 N 1.31518 * 119.99587 * 180.02562 * 10 8 6 12 12 Si 1.86796 * 120.00285 * 0.02562 * 10 8 6 13 13 H 1.48493 * 109.47392 * 89.99936 * 12 10 8 14 14 H 1.48505 * 109.47128 * 210.00032 * 12 10 8 15 15 H 1.48499 * 109.47020 * 329.99720 * 12 10 8 16 16 C 1.54861 * 101.66110 * 25.43666 * 6 5 4 17 17 C 1.34415 * 124.35027 * 299.97426 * 4 2 1 18 18 O 1.21284 * 124.94104 * 0.41322 * 17 4 2 19 19 H 1.08996 * 109.46692 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46782 * 299.99730 * 1 2 3 21 21 H 1.08998 * 109.47269 * 59.99886 * 1 2 3 22 22 H 1.08998 * 109.47122 * 239.99845 * 2 1 3 23 23 H 1.08998 * 109.46739 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47109 * 300.00212 * 3 2 1 25 25 H 1.08998 * 109.47216 * 59.99902 * 3 2 1 26 26 H 1.09002 * 110.24740 * 281.96247 * 5 4 2 27 27 H 1.09002 * 110.24616 * 43.87772 * 5 4 2 28 28 H 0.97002 * 120.00082 * 180.02562 * 11 10 8 29 29 H 1.08998 * 110.46775 * 216.51886 * 16 6 5 30 30 H 1.08993 * 110.60550 * 93.93039 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8888 1.1728 6 6 3.4747 -1.9930 2.5886 7 1 4.4424 -1.4935 2.6347 8 6 3.5918 -3.4320 3.0207 9 1 3.2663 -4.2223 2.3605 10 6 4.1136 -3.7395 4.2594 11 7 4.2162 -4.9953 4.6363 12 14 4.6746 -2.3725 5.4021 13 1 3.5399 -1.9482 6.2609 14 1 5.7846 -2.8658 6.2565 15 1 5.1455 -1.2167 4.5974 16 6 2.4211 -1.2412 3.4388 17 6 1.7485 -0.3080 2.4562 18 8 1.0653 0.6466 2.7610 19 1 -0.3632 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 2.2645 -2.7716 0.9548 27 1 3.6553 -1.7779 0.4297 28 1 4.5829 -5.2117 5.5079 29 1 2.9065 -0.6737 4.2327 30 1 1.6972 -1.9398 3.8581 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:12 Heat of formation + Delta-G solvation = -62.953964 kcal Electronic energy + Delta-G solvation = -12937.102076 eV Core-core repulsion = 10731.189697 eV Total energy + Delta-G solvation = -2205.912379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.40539 -37.50783 -36.33738 -34.31263 -31.31255 -28.75877 -28.09029 -26.48138 -23.31845 -21.91610 -19.91923 -18.90560 -17.57840 -16.99318 -16.45925 -15.93224 -15.05956 -14.83596 -14.71655 -14.53171 -14.36420 -13.58309 -13.37081 -13.00784 -12.86268 -12.61462 -12.41854 -12.21482 -12.14766 -11.83339 -11.60041 -11.29816 -10.80806 -10.46026 -9.59642 -8.30024 -6.35272 1.36108 1.39578 1.46036 1.62557 2.14791 2.33733 3.04119 3.59982 3.89708 4.11070 4.15200 4.27357 4.33628 4.44825 4.71711 4.74187 4.78050 4.82530 4.91772 4.93698 5.09616 5.25778 5.33000 5.41528 5.59547 5.82125 6.17541 6.29730 6.71977 7.25545 7.32099 8.85441 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056499 B = 0.010854 C = 0.010072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.467803 B = 2579.140548 C = 2779.294464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 C -0.160 4.160 4 N -0.610 5.610 5 C 0.123 3.877 6 C 0.006 3.994 7 H 0.054 0.946 8 C -0.509 4.509 9 H 0.051 0.949 10 C 0.025 3.975 11 N -0.942 5.942 12 Si 0.926 3.074 13 H -0.270 1.270 14 H -0.290 1.290 15 H -0.244 1.244 16 C -0.165 4.165 17 C 0.519 3.481 18 O -0.578 6.578 19 H 0.053 0.947 20 H 0.041 0.959 21 H 0.093 0.907 22 H 0.116 0.884 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 9.596 -9.352 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 C -0.218 4.218 4 N -0.343 5.343 5 C 0.001 3.999 6 C -0.014 4.014 7 H 0.072 0.928 8 C -0.547 4.547 9 H 0.069 0.931 10 C -0.174 4.174 11 N -0.581 5.581 12 Si 0.751 3.249 13 H -0.196 1.196 14 H -0.216 1.216 15 H -0.167 1.167 16 C -0.206 4.206 17 C 0.308 3.692 18 O -0.459 6.459 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.112 0.888 22 H 0.133 0.867 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.917 9.997 -9.168 13.874 hybrid contribution 0.251 -0.017 1.091 1.120 sum -2.665 9.980 -8.076 13.112 Atomic orbital electron populations 1.22133 0.94777 1.02111 1.02895 1.21266 0.94667 0.93509 0.86754 1.22125 1.01280 0.95519 1.02876 1.48658 1.50775 1.29080 1.05804 1.22149 0.93469 0.85850 0.98470 1.20127 0.94306 0.94933 0.92010 0.92842 1.21056 1.41062 0.90996 1.01614 0.93077 1.25698 0.95139 0.97071 0.99504 1.70010 1.47032 1.19364 1.21707 0.86105 0.78509 0.80666 0.79626 1.19570 1.21610 1.16750 1.22874 1.00846 0.98313 0.98522 1.21071 0.79266 0.83785 0.85101 1.90572 1.41871 1.30893 1.82592 0.92815 0.94009 0.88802 0.86653 0.92422 0.88840 0.94037 0.91437 0.88789 0.92388 0.90568 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.20 71.98 0.66 -3.37 16 2 C 0.14 3.57 3.47 44.99 0.16 3.73 16 3 C -0.16 -3.87 9.20 71.98 0.66 -3.21 16 4 N -0.61 -20.45 2.83 -794.02 -2.25 -22.70 16 5 C 0.12 4.20 6.85 86.83 0.59 4.80 16 6 C 0.01 0.24 2.51 -10.40 -0.03 0.21 16 7 H 0.05 2.23 7.00 -2.39 -0.02 2.22 16 8 C -0.51 -26.45 8.98 25.60 0.23 -26.22 16 9 H 0.05 2.89 7.85 -2.91 -0.02 2.87 16 10 C 0.02 1.34 5.46 84.65 0.46 1.80 16 11 N -0.94 -55.89 13.96 21.45 0.30 -55.59 16 12 Si 0.93 42.24 25.12 68.60 1.72 43.97 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.24 -10.27 6.44 99.48 0.64 -9.63 16 16 C -0.17 -6.97 5.07 30.67 0.16 -6.81 16 17 C 0.52 20.83 7.41 87.90 0.65 21.48 16 18 O -0.58 -25.57 15.12 -3.04 -0.05 -25.62 16 19 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.04 1.30 6.78 -2.39 -0.02 1.28 16 21 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.12 2.29 8.07 -2.39 -0.02 2.27 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.26 6.80 -2.39 -0.02 1.24 16 26 H 0.07 2.37 7.74 -2.39 -0.02 2.35 16 27 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.08 3.19 6.32 -2.39 -0.02 3.17 16 30 H 0.09 4.09 7.90 -2.39 -0.02 4.07 16 Total: -1.00 -63.08 243.29 4.32 -58.76 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.04 Total: 8.76 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 3.55 Total: -7.58 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.95 Total: -78.29 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.72 Total: 43.97 kcal Total: -63.08 4.32 -58.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.196 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds