Wall clock time and date at job start Mon Mar 30 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47568 * 2 1 4 4 N 1.46506 * 109.47317 * 120.00236 * 2 1 3 5 5 C 1.46762 * 124.35139 * 119.94567 * 4 2 1 6 6 C 1.54484 * 105.47353 * 197.03902 * 5 4 2 7 7 H 1.08995 * 110.99805 * 92.72010 * 6 5 4 8 8 C 1.50697 * 110.96704 * 216.46908 * 6 5 4 9 9 H 1.07991 * 120.00449 * 353.55589 * 8 6 5 10 10 C 1.37885 * 119.99686 * 173.83420 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.72095 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.72528 * 10 8 6 13 13 H 1.48498 * 109.47416 * 59.99812 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99397 * 12 10 8 16 16 C 1.54630 * 101.76430 * 334.58786 * 6 5 4 17 17 C 1.34423 * 124.34624 * 299.97597 * 4 2 1 18 18 O 1.21283 * 124.93940 * 359.53445 * 17 4 2 19 19 H 1.08997 * 109.47084 * 59.99827 * 1 2 3 20 20 H 1.08999 * 109.47186 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46537 * 300.00000 * 1 2 3 22 22 H 1.09004 * 109.47118 * 239.99507 * 2 1 3 23 23 H 1.08994 * 109.47553 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47059 * 300.00188 * 3 2 1 25 25 H 1.09004 * 109.47304 * 59.99621 * 3 2 1 26 26 H 1.09006 * 110.24227 * 78.04156 * 5 4 2 27 27 H 1.09000 * 110.24551 * 316.03988 * 5 4 2 28 28 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 29 29 H 1.08998 * 110.48730 * 143.47707 * 16 6 5 30 30 H 1.09003 * 110.48236 * 266.11930 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8647 -1.8895 1.1727 6 6 2.7597 -2.4959 2.5897 7 1 1.9662 -3.2416 2.6376 8 6 4.0772 -3.0856 3.0228 9 1 4.9005 -3.1380 2.3260 10 6 4.2295 -3.5636 4.3071 11 7 3.2268 -3.4998 5.1558 12 14 5.8601 -4.3016 4.8417 13 1 6.9321 -3.2826 4.7087 14 1 5.7649 -4.7388 6.2578 15 1 6.1792 -5.4709 3.9836 16 6 2.4037 -1.2535 3.4387 17 6 1.7484 -0.3081 2.4562 18 8 1.0777 0.6553 2.7610 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 3.8975 -1.6178 0.9543 27 1 2.4952 -2.5976 0.4310 28 1 3.3341 -3.8358 6.0594 29 1 1.7071 -1.5212 4.2331 30 1 3.3056 -0.8054 3.8558 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259958810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:14 Heat of formation + Delta-G solvation = -49.588200 kcal Electronic energy + Delta-G solvation = -12881.218339 eV Core-core repulsion = 10675.885543 eV Total energy + Delta-G solvation = -2205.332796 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60364 -35.64098 -34.74303 -32.32687 -29.08106 -26.92180 -26.83134 -24.60478 -21.78323 -20.26272 -18.05198 -16.61538 -15.83197 -15.20043 -14.69794 -14.30687 -13.42590 -13.11231 -12.97947 -12.74420 -12.23394 -11.89773 -11.79496 -11.69981 -11.01095 -10.94973 -10.84448 -10.80590 -10.62781 -10.17741 -9.48664 -9.28443 -8.74716 -8.39862 -7.95347 -6.13611 -4.19481 3.26967 3.32778 3.34037 3.49628 3.73960 4.35191 5.07186 5.19689 5.37402 5.47443 5.74786 5.82186 5.82254 6.01124 6.07592 6.12007 6.23569 6.44035 6.48688 6.51777 6.70501 6.86890 7.40068 7.41867 7.61474 7.82533 7.94168 8.22159 8.81474 9.08137 9.46477 10.95948 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064354 B = 0.009440 C = 0.008984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.986274 B = 2965.429802 C = 3115.890455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 C -0.165 4.165 4 N -0.622 5.622 5 C 0.106 3.894 6 C 0.046 3.954 7 H 0.043 0.957 8 C -0.521 4.521 9 H 0.062 0.938 10 C 0.066 3.934 11 N -0.885 5.885 12 Si 0.896 3.104 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.127 4.127 17 C 0.513 3.487 18 O -0.562 6.562 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.091 0.909 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 3.547 -8.396 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C -0.223 4.223 4 N -0.356 5.356 5 C -0.016 4.016 6 C 0.027 3.973 7 H 0.061 0.939 8 C -0.559 4.559 9 H 0.080 0.920 10 C -0.138 4.138 11 N -0.522 5.522 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.167 4.167 17 C 0.304 3.696 18 O -0.442 6.442 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.652 4.025 -8.118 9.211 hybrid contribution 0.916 -0.486 0.294 1.078 sum -0.735 3.539 -7.825 8.619 Atomic orbital electron populations 1.22161 0.95448 1.02087 1.02605 1.20797 0.94027 0.92908 0.87614 1.22161 1.01121 0.96401 1.02622 1.48613 1.51490 1.29978 1.05526 1.22433 0.93141 0.84752 1.01295 1.19630 0.98227 0.92368 0.87098 0.93927 1.20937 0.96933 1.40768 0.97309 0.92032 1.24989 0.96729 0.95414 0.96623 1.69948 1.30804 1.45704 1.05727 0.86597 0.83821 0.79602 0.77635 1.20170 1.21235 1.20168 1.22370 1.01027 0.95898 0.97419 1.21832 0.78647 0.84722 0.84416 1.90549 1.41355 1.30113 1.82214 0.92276 0.92673 0.91089 0.90264 0.92723 0.92295 0.91060 0.92046 0.92553 0.92621 0.89080 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.20 37.16 0.34 -2.11 16 2 C 0.15 2.35 3.47 -67.93 -0.24 2.11 16 3 C -0.16 -2.44 9.20 37.16 0.34 -2.10 16 4 N -0.62 -11.96 2.83 -164.84 -0.47 -12.42 16 5 C 0.11 2.06 6.85 -3.12 -0.02 2.04 16 6 C 0.05 1.07 3.08 -90.14 -0.28 0.80 16 7 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.52 -13.31 8.42 -34.44 -0.29 -13.60 16 9 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 10 C 0.07 1.73 5.34 -17.82 -0.10 1.63 16 11 N -0.88 -24.34 12.39 55.43 0.69 -23.65 16 12 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 C -0.13 -3.01 5.45 -26.74 -0.15 -3.15 16 17 C 0.51 11.45 7.41 -10.86 -0.08 11.37 16 18 O -0.56 -13.53 15.12 5.56 0.08 -13.45 16 19 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.07 1.24 6.80 -51.93 -0.35 0.88 16 22 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 26 H 0.06 1.18 7.78 -51.93 -0.40 0.77 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.09 2.31 7.98 -51.93 -0.41 1.89 16 30 H 0.09 2.23 7.89 -51.93 -0.41 1.82 16 LS Contribution 249.73 15.07 3.76 3.76 Total: -1.00 -28.16 249.73 -5.84 -34.01 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.42 Total: -0.51 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.46 Total: -3.02 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.22 Total: -36.07 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.16 -5.84 -34.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.582 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds