Wall clock time and date at job start Mon Mar 30 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47568 * 2 1 4 4 N 1.46506 * 109.47317 * 120.00236 * 2 1 3 5 5 C 1.46762 * 124.35139 * 119.94567 * 4 2 1 6 6 C 1.54484 * 105.47353 * 197.03902 * 5 4 2 7 7 H 1.08995 * 110.99805 * 92.72010 * 6 5 4 8 8 C 1.50697 * 110.96704 * 216.46908 * 6 5 4 9 9 H 1.07991 * 120.00449 * 353.55589 * 8 6 5 10 10 C 1.37885 * 119.99686 * 173.83420 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.72095 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.72528 * 10 8 6 13 13 H 1.48498 * 109.47416 * 59.99812 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99397 * 12 10 8 16 16 C 1.54630 * 101.76430 * 334.58786 * 6 5 4 17 17 C 1.34423 * 124.34624 * 299.97597 * 4 2 1 18 18 O 1.21283 * 124.93940 * 359.53445 * 17 4 2 19 19 H 1.08997 * 109.47084 * 59.99827 * 1 2 3 20 20 H 1.08999 * 109.47186 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46537 * 300.00000 * 1 2 3 22 22 H 1.09004 * 109.47118 * 239.99507 * 2 1 3 23 23 H 1.08994 * 109.47553 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47059 * 300.00188 * 3 2 1 25 25 H 1.09004 * 109.47304 * 59.99621 * 3 2 1 26 26 H 1.09006 * 110.24227 * 78.04156 * 5 4 2 27 27 H 1.09000 * 110.24551 * 316.03988 * 5 4 2 28 28 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 29 29 H 1.08998 * 110.48730 * 143.47707 * 16 6 5 30 30 H 1.09003 * 110.48236 * 266.11930 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8647 -1.8895 1.1727 6 6 2.7597 -2.4959 2.5897 7 1 1.9662 -3.2416 2.6376 8 6 4.0772 -3.0856 3.0228 9 1 4.9005 -3.1380 2.3260 10 6 4.2295 -3.5636 4.3071 11 7 3.2268 -3.4998 5.1558 12 14 5.8601 -4.3016 4.8417 13 1 6.9321 -3.2826 4.7087 14 1 5.7649 -4.7388 6.2578 15 1 6.1792 -5.4709 3.9836 16 6 2.4037 -1.2535 3.4387 17 6 1.7484 -0.3081 2.4562 18 8 1.0777 0.6553 2.7610 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 3.8975 -1.6178 0.9543 27 1 2.4952 -2.5976 0.4310 28 1 3.3341 -3.8358 6.0594 29 1 1.7071 -1.5212 4.2331 30 1 3.3056 -0.8054 3.8558 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:14 Heat of formation + Delta-G solvation = -66.453779 kcal Electronic energy + Delta-G solvation = -12881.949686 eV Core-core repulsion = 10675.885543 eV Total energy + Delta-G solvation = -2206.064142 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.28747 -37.41255 -36.28226 -34.16235 -30.79215 -28.65569 -28.08495 -26.46822 -23.21152 -22.09767 -19.70329 -18.51906 -17.40128 -16.86489 -16.54738 -15.92954 -14.94570 -14.61790 -14.49857 -14.41412 -14.09639 -13.43903 -13.27924 -12.95625 -12.78214 -12.64396 -12.45911 -12.18248 -12.15713 -12.01211 -11.28412 -11.18190 -10.67441 -10.27571 -9.52975 -8.14033 -6.25830 1.48201 1.48736 1.56255 1.71170 2.21926 2.46064 3.18510 3.73796 4.05797 4.16841 4.24438 4.37042 4.49581 4.64004 4.74566 4.81434 4.85719 4.91238 4.98740 4.99663 5.28933 5.34168 5.46079 5.63046 5.82483 5.91125 6.18384 6.33353 6.82919 7.35012 7.44359 8.95246 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064354 B = 0.009440 C = 0.008984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.986274 B = 2965.429802 C = 3115.890455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 C -0.160 4.160 4 N -0.611 5.611 5 C 0.116 3.884 6 C 0.039 3.961 7 H 0.020 0.980 8 C -0.530 4.530 9 H 0.071 0.929 10 C 0.014 3.986 11 N -0.919 5.919 12 Si 0.959 3.041 13 H -0.271 1.271 14 H -0.291 1.291 15 H -0.267 1.267 16 C -0.121 4.121 17 C 0.511 3.489 18 O -0.585 6.585 19 H 0.094 0.906 20 H 0.053 0.947 21 H 0.038 0.962 22 H 0.116 0.884 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.262 0.738 29 H 0.063 0.937 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 3.483 -10.702 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 C -0.218 4.218 4 N -0.344 5.344 5 C -0.006 4.006 6 C 0.020 3.980 7 H 0.038 0.962 8 C -0.568 4.568 9 H 0.090 0.910 10 C -0.186 4.186 11 N -0.557 5.557 12 Si 0.784 3.216 13 H -0.196 1.196 14 H -0.216 1.216 15 H -0.191 1.191 16 C -0.161 4.161 17 C 0.301 3.699 18 O -0.467 6.467 19 H 0.113 0.887 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.134 0.866 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.770 3.957 -10.471 11.221 hybrid contribution 0.613 -0.459 0.973 1.239 sum -0.157 3.498 -9.498 10.123 Atomic orbital electron populations 1.22125 0.94812 1.02102 1.02761 1.21255 0.94630 0.93488 0.86894 1.22117 1.01138 0.95724 1.02774 1.48656 1.50502 1.29630 1.05638 1.22319 0.94041 0.85082 0.99138 1.19569 0.96825 0.91730 0.89909 0.96195 1.21328 0.97831 1.40147 0.97508 0.91048 1.25796 0.99816 0.96018 0.96923 1.70089 1.32791 1.46931 1.05921 0.85596 0.79952 0.79064 0.76962 1.19577 1.21644 1.19141 1.22164 0.99772 0.96743 0.97460 1.21478 0.78712 0.84256 0.85431 1.90535 1.42448 1.30916 1.82792 0.88693 0.92741 0.94317 0.86621 0.92630 0.88757 0.94253 0.90945 0.89600 0.92906 0.91835 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.20 71.98 0.66 -3.67 16 2 C 0.14 3.89 3.47 44.99 0.16 4.05 16 3 C -0.16 -4.27 9.20 71.98 0.66 -3.61 16 4 N -0.61 -22.45 2.83 -794.01 -2.25 -24.70 16 5 C 0.12 4.26 6.85 86.83 0.59 4.85 16 6 C 0.04 1.82 3.08 -10.48 -0.03 1.79 16 7 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 8 C -0.53 -26.83 8.42 25.60 0.22 -26.62 16 9 H 0.07 3.40 7.66 -2.92 -0.02 3.38 16 10 C 0.01 0.75 5.34 84.66 0.45 1.20 16 11 N -0.92 -51.72 12.39 21.45 0.27 -51.45 16 12 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 16 C -0.12 -5.90 5.45 30.59 0.17 -5.74 16 17 C 0.51 22.98 7.41 87.90 0.65 23.63 16 18 O -0.58 -28.67 15.12 -3.04 -0.05 -28.72 16 19 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 20 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.04 1.30 6.80 -2.39 -0.02 1.29 16 22 H 0.12 2.50 8.07 -2.39 -0.02 2.48 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.31 6.77 -2.39 -0.02 1.29 16 26 H 0.07 2.55 7.78 -2.38 -0.02 2.53 16 27 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.06 3.40 7.98 -2.39 -0.02 3.38 16 30 H 0.07 3.77 7.89 -2.39 -0.02 3.75 16 Total: -1.00 -61.31 249.73 4.63 -56.68 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.10 Total: 8.84 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 3.53 Total: -4.11 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.98 Total: -76.15 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -61.31 4.63 -56.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.773 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds