Wall clock time and date at job start Mon Mar 30 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.52998 * 114.26338 * 139.79590 * 6 5 4 8 8 C 1.53008 * 109.47239 * 91.47539 * 7 6 5 9 9 C 1.50692 * 109.47065 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00398 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99874 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99699 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00012 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47567 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47056 * 120.00026 * 13 11 9 16 16 H 1.48494 * 109.47431 * 240.00249 * 13 11 9 17 17 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 18 18 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 21 21 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 22 22 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 23 23 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 24 24 H 1.08997 * 109.47017 * 211.46972 * 7 6 5 25 25 H 1.09000 * 109.47428 * 331.47627 * 7 6 5 26 26 H 1.09004 * 109.46516 * 300.00012 * 8 7 6 27 27 H 1.09000 * 109.46839 * 59.99727 * 8 7 6 28 28 H 0.97009 * 119.99689 * 179.97438 * 12 11 9 29 29 H 1.08990 * 113.47221 * 321.86278 * 17 4 2 30 30 H 1.09005 * 113.46914 * 92.24556 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8908 -4.1224 -0.2015 8 6 3.4745 -5.3256 -1.0501 9 6 4.1903 -6.5578 -0.5599 10 1 4.8741 -6.4896 0.2732 11 6 3.9722 -7.7723 -1.1751 12 7 3.1399 -7.8553 -2.1900 13 14 4.8600 -9.2996 -0.5680 14 1 5.7347 -8.9413 0.5774 15 1 3.8637 -10.3108 -0.1319 16 1 5.6870 -9.8609 -1.6662 17 6 3.5942 -1.5740 -0.0002 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 -0.8900 -0.5138 20 1 -0.3633 0.8900 -0.5138 21 1 1.7665 -3.0226 1.0062 22 1 0.9552 -2.8281 -0.6064 23 1 3.1236 -2.8009 -1.7865 24 1 4.9675 -3.9747 -0.2843 25 1 3.6280 -4.3045 0.8406 26 1 2.3977 -5.4734 -0.9674 27 1 3.7373 -5.1436 -2.0922 28 1 2.9868 -8.7097 -2.6230 29 1 4.2291 -0.9380 -0.6169 30 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964357.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:36 Heat of formation + Delta-G solvation = -19.185883 kcal Electronic energy + Delta-G solvation = -12109.108912 eV Core-core repulsion = 9905.094459 eV Total energy + Delta-G solvation = -2204.014453 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19627 -37.80196 -33.77904 -31.82384 -30.32448 -27.86403 -25.77392 -24.90812 -21.58788 -19.90541 -18.81125 -16.83279 -16.29593 -15.62696 -15.55198 -14.60068 -14.29056 -13.49247 -13.12937 -12.60808 -12.55261 -12.26530 -12.12432 -11.75528 -11.60295 -11.03119 -10.76734 -10.57139 -10.38353 -9.92060 -9.61248 -9.30810 -9.07093 -8.56799 -8.38166 -6.03503 -4.05880 2.68582 2.99535 3.28865 3.36885 3.40557 4.42897 4.53461 4.71668 5.13899 5.19785 5.29734 5.32861 5.40616 5.56074 5.61578 5.73584 5.79401 5.95871 6.04067 6.31212 6.54054 6.80066 7.04231 7.63828 7.76556 7.86443 7.96671 8.21604 8.38728 9.01774 9.58776 11.07732 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.089489 B = 0.006005 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.813728 B = 4661.737646 C = 4815.765016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.535 3.465 3 O -0.560 6.560 4 N -0.648 5.648 5 C 0.103 3.897 6 C -0.116 4.116 7 C -0.100 4.100 8 C 0.021 3.979 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.101 3.899 18 H 0.091 0.909 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.072 0.928 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 9.230 4.014 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.326 3.674 3 O -0.439 6.439 4 N -0.384 5.384 5 C -0.019 4.019 6 C -0.135 4.135 7 C -0.138 4.138 8 C -0.016 4.016 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.021 4.021 18 H 0.109 0.891 19 H 0.099 0.901 20 H 0.109 0.891 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.096 9.888 3.893 11.389 hybrid contribution 0.355 -1.003 0.303 1.106 sum -3.741 8.885 4.195 10.514 Atomic orbital electron populations 1.21814 0.91548 1.04704 1.04504 1.20377 0.90086 0.81538 0.75415 1.90694 1.70957 1.30630 1.51635 1.49863 1.10180 1.05913 1.72397 1.23297 0.99587 0.77903 1.01130 1.23170 0.95036 0.94874 1.00419 1.21579 0.98852 0.93371 0.99997 1.19100 0.96751 0.90892 0.94817 1.21303 1.25548 0.93105 1.16004 0.92626 1.25021 0.95318 0.99087 0.95016 1.69971 1.35905 1.25274 1.22350 0.86561 0.79624 0.83196 0.78767 1.19742 1.21043 1.21033 1.23167 0.83632 0.94472 1.00862 0.89053 0.90128 0.89100 0.89391 0.90410 0.88098 0.92484 0.92782 0.96488 0.96530 0.93057 0.90924 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.18 36.01 0.37 -1.33 16 2 C 0.53 8.05 8.19 -10.98 -0.09 7.96 16 3 O -0.56 -10.66 17.88 5.56 0.10 -10.56 16 4 N -0.65 -9.41 3.69 -185.02 -0.68 -10.09 16 5 C 0.10 1.38 7.85 -8.36 -0.07 1.32 16 6 C -0.12 -1.76 4.01 -89.96 -0.36 -2.13 16 7 C -0.10 -1.83 5.07 -26.73 -0.14 -1.96 16 8 C 0.02 0.51 4.96 -27.88 -0.14 0.38 16 9 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 10 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.10 1.44 8.19 -8.49 -0.07 1.37 16 18 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 19 H 0.08 0.72 7.76 -51.93 -0.40 0.31 16 20 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 22 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 23 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.95 7.81 -51.93 -0.41 0.55 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -31.71 261.28 -6.39 -38.10 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -4.55 Total: -4.63 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.90 Total: -7.37 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.05 Total: -35.55 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.10 Total: -10.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.71 -6.39 -38.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964357.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.915 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds