Wall clock time and date at job start Mon Mar 30 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.52998 * 114.26338 * 139.79590 * 6 5 4 8 8 C 1.53008 * 109.47239 * 91.47539 * 7 6 5 9 9 C 1.50692 * 109.47065 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00398 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99874 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99699 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00012 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47567 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47056 * 120.00026 * 13 11 9 16 16 H 1.48494 * 109.47431 * 240.00249 * 13 11 9 17 17 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 18 18 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 21 21 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 22 22 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 23 23 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 24 24 H 1.08997 * 109.47017 * 211.46972 * 7 6 5 25 25 H 1.09000 * 109.47428 * 331.47627 * 7 6 5 26 26 H 1.09004 * 109.46516 * 300.00012 * 8 7 6 27 27 H 1.09000 * 109.46839 * 59.99727 * 8 7 6 28 28 H 0.97009 * 119.99689 * 179.97438 * 12 11 9 29 29 H 1.08990 * 113.47221 * 321.86278 * 17 4 2 30 30 H 1.09005 * 113.46914 * 92.24556 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8908 -4.1224 -0.2015 8 6 3.4745 -5.3256 -1.0501 9 6 4.1903 -6.5578 -0.5599 10 1 4.8741 -6.4896 0.2732 11 6 3.9722 -7.7723 -1.1751 12 7 3.1399 -7.8553 -2.1900 13 14 4.8600 -9.2996 -0.5680 14 1 5.7347 -8.9413 0.5774 15 1 3.8637 -10.3108 -0.1319 16 1 5.6870 -9.8609 -1.6662 17 6 3.5942 -1.5740 -0.0002 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 -0.8900 -0.5138 20 1 -0.3633 0.8900 -0.5138 21 1 1.7665 -3.0226 1.0062 22 1 0.9552 -2.8281 -0.6064 23 1 3.1236 -2.8009 -1.7865 24 1 4.9675 -3.9747 -0.2843 25 1 3.6280 -4.3045 0.8406 26 1 2.3977 -5.4734 -0.9674 27 1 3.7373 -5.1436 -2.0922 28 1 2.9868 -8.7097 -2.6230 29 1 4.2291 -0.9380 -0.6169 30 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964357.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:36 Heat of formation + Delta-G solvation = -39.537696 kcal Electronic energy + Delta-G solvation = -12109.991432 eV Core-core repulsion = 9905.094459 eV Total energy + Delta-G solvation = -2204.896973 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37541 -39.05261 -35.65693 -33.50188 -31.55015 -29.22897 -26.90652 -26.60954 -23.29039 -21.31241 -19.94242 -18.40926 -17.90474 -16.82179 -16.76280 -16.43586 -15.63886 -14.90037 -14.61608 -13.95686 -13.63128 -13.56204 -13.34479 -13.21917 -13.00507 -12.81690 -12.43586 -12.15764 -11.96273 -11.50420 -11.19095 -10.99599 -10.75513 -10.48647 -9.75801 -8.15154 -6.24687 1.43014 1.44594 1.55639 1.56518 1.89993 2.45171 3.19063 3.40727 3.63039 4.05130 4.08980 4.34575 4.52602 4.54580 4.61004 4.66838 4.68795 4.77319 4.94602 4.99697 5.07814 5.33153 5.39359 5.61044 5.85213 5.94266 6.32079 6.74139 6.94161 7.06880 7.44651 8.96457 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.089489 B = 0.006005 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.813728 B = 4661.737646 C = 4815.765016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.526 3.474 3 O -0.608 6.608 4 N -0.651 5.651 5 C 0.111 3.889 6 C -0.116 4.116 7 C -0.084 4.084 8 C 0.024 3.976 9 C -0.539 4.539 10 H 0.060 0.940 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.959 3.041 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.282 1.282 17 C 0.102 3.898 18 H 0.112 0.888 19 H 0.097 0.903 20 H 0.098 0.902 21 H 0.104 0.896 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.001 0.999 27 H -0.011 1.011 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 9.001 5.208 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.319 3.681 3 O -0.491 6.491 4 N -0.385 5.385 5 C -0.011 4.011 6 C -0.135 4.135 7 C -0.122 4.122 8 C -0.013 4.013 9 C -0.578 4.578 10 H 0.079 0.921 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.784 3.216 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.208 1.208 17 C -0.021 4.021 18 H 0.131 0.869 19 H 0.115 0.885 20 H 0.117 0.883 21 H 0.122 0.878 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.019 0.981 27 H 0.007 0.993 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.420 9.646 5.097 11.771 hybrid contribution 0.465 -0.934 -0.094 1.048 sum -3.954 8.713 5.003 10.797 Atomic orbital electron populations 1.21847 0.87667 1.05925 1.06215 1.21274 0.91922 0.80708 0.74186 1.90669 1.72291 1.32208 1.53924 1.49947 1.10273 1.06407 1.71852 1.23335 0.98865 0.76997 1.01902 1.22960 0.96502 0.93951 1.00061 1.21329 0.99143 0.92283 0.99461 1.19014 0.95464 0.92599 0.94236 1.21796 1.25580 0.94377 1.16003 0.92145 1.25908 0.96130 1.02513 0.95186 1.70093 1.37489 1.26164 1.23694 0.85491 0.78506 0.79166 0.78434 1.18594 1.20533 1.20832 1.23168 0.83989 0.93531 1.01419 0.86941 0.88457 0.88323 0.87841 0.89009 0.89082 0.92493 0.91599 0.98087 0.99275 0.92945 0.91384 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.18 71.24 0.73 -2.07 16 2 C 0.53 15.03 8.19 87.66 0.72 15.75 16 3 O -0.61 -22.88 17.88 -3.02 -0.05 -22.94 16 4 N -0.65 -17.71 3.69 -857.67 -3.16 -20.88 16 5 C 0.11 2.71 7.85 83.27 0.65 3.36 16 6 C -0.12 -3.39 4.01 -10.37 -0.04 -3.43 16 7 C -0.08 -2.99 5.07 30.60 0.16 -2.84 16 8 C 0.02 1.16 4.96 29.85 0.15 1.31 16 9 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 10 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 11 C 0.00 0.01 5.46 84.66 0.46 0.47 16 12 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 13 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C 0.10 2.75 8.19 83.19 0.68 3.44 16 18 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 19 H 0.10 1.41 7.76 -2.39 -0.02 1.39 16 20 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.10 2.27 7.88 -2.39 -0.02 2.25 16 22 H 0.09 2.01 7.96 -2.39 -0.02 1.99 16 23 H 0.09 2.86 8.12 -2.39 -0.02 2.84 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 2.19 7.81 -2.39 -0.02 2.17 16 26 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 28 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 2.38 8.11 -2.38 -0.02 2.36 16 Total: -1.00 -67.97 261.28 3.93 -64.05 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.10 Total: 2.56 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 3.74 Total: -12.92 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.88 Total: -75.70 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.97 3.93 -64.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964357.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.509 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds