Wall clock time and date at job start Mon Mar 30 2020 02:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.72843 * 2 1 4 4 C 1.53382 * 109.73447 * 239.31759 * 2 1 3 5 5 C 1.53014 * 109.13361 * 187.88274 * 4 2 1 6 6 N 1.46794 * 109.89922 * 62.84940 * 5 4 2 7 7 C 1.47090 * 111.16442 * 294.61958 * 6 5 4 8 8 H 1.09000 * 109.62442 * 296.46805 * 7 6 5 9 9 C 1.53002 * 109.77773 * 175.99510 * 7 6 5 10 10 C 1.50696 * 109.47674 * 65.85720 * 9 7 6 11 11 H 1.08007 * 119.99722 * 359.97438 * 10 9 7 12 12 C 1.37879 * 120.00193 * 179.97438 * 10 9 7 13 13 N 1.31506 * 119.99813 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00014 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46748 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47294 * 119.99723 * 14 12 10 17 17 H 1.48496 * 109.47072 * 240.00303 * 14 12 10 18 18 C 1.51313 * 108.54130 * 56.18737 * 7 6 5 19 19 O 1.20758 * 121.00786 * 129.74551 * 18 7 6 20 20 H 1.09002 * 109.47153 * 299.34930 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.35121 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.35102 * 1 2 3 23 23 H 1.09001 * 109.52278 * 307.77563 * 4 2 1 24 24 H 1.08997 * 109.53166 * 67.98133 * 4 2 1 25 25 H 1.08997 * 109.39826 * 302.71448 * 5 4 2 26 26 H 1.09003 * 109.32728 * 182.94117 * 5 4 2 27 27 H 1.00892 * 111.00032 * 58.69855 * 6 5 4 28 28 H 1.09009 * 109.46889 * 185.85933 * 9 7 6 29 29 H 1.09005 * 109.47293 * 305.85208 * 9 7 6 30 30 H 0.96999 * 120.00261 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0260 0.0000 4 6 2.0479 -0.7367 -1.2416 5 6 3.5651 -0.9014 -1.1306 6 7 3.8935 -1.7338 0.0331 7 6 3.5146 -1.0659 1.2876 8 1 4.0963 -0.1517 1.4058 9 6 3.7781 -1.9992 2.4710 10 6 5.2603 -2.2367 2.6033 11 1 5.9460 -1.7690 1.9121 12 6 5.7413 -3.0509 3.6067 13 7 4.9065 -3.6199 4.4486 14 14 7.5786 -3.3459 3.7702 15 1 8.2965 -2.5973 2.7074 16 1 8.0384 -2.8781 5.1025 17 1 7.8614 -4.7969 3.6302 18 6 2.0413 -0.7266 1.2262 19 8 1.2959 -1.0258 2.1278 20 1 -0.3633 0.5037 0.8958 21 1 -0.3633 -1.0276 -0.0116 22 1 -0.3634 0.5239 -0.8841 23 1 1.5785 -1.7185 -1.3049 24 1 1.8084 -0.1591 -2.1344 25 1 4.0283 0.0787 -1.0171 26 1 3.9434 -1.3779 -2.0351 27 1 3.4602 -2.6421 -0.0383 28 1 3.4003 -1.5418 3.3856 29 1 3.2713 -2.9497 2.3041 30 1 5.2447 -4.1925 5.1547 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983681.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:58 Heat of formation + Delta-G solvation = -52.096175 kcal Electronic energy + Delta-G solvation = -12772.175030 eV Core-core repulsion = 10566.733481 eV Total energy + Delta-G solvation = -2205.441550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81109 -36.41365 -34.05875 -32.41540 -30.11443 -27.26297 -26.03764 -23.26934 -21.94163 -20.42327 -18.95560 -16.48987 -15.63166 -14.97882 -14.79964 -14.63658 -14.47735 -13.86478 -12.87827 -12.56126 -12.24673 -12.17792 -11.96594 -11.38872 -11.30253 -10.99776 -10.82550 -10.63250 -10.46112 -10.32925 -9.83958 -9.13260 -9.05859 -8.28788 -7.61746 -5.89781 -3.90317 2.44124 3.38259 3.45413 3.50642 4.36107 4.57894 4.69205 4.89118 4.95223 5.19400 5.46560 5.47432 5.53244 5.64177 5.80055 5.89618 5.98292 6.03534 6.15839 6.22293 6.28192 6.68335 7.40298 7.67965 7.80575 7.83054 8.07992 8.12200 8.50720 9.16574 9.71962 11.21802 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056922 B = 0.009511 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.780982 B = 2943.369485 C = 3318.236853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.148 4.148 3 H 0.099 0.901 4 C -0.145 4.145 5 C 0.049 3.951 6 N -0.651 5.651 7 C 0.053 3.947 8 H 0.099 0.901 9 C 0.036 3.964 10 C -0.500 4.500 11 H 0.064 0.936 12 C 0.051 3.949 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.286 1.286 18 C 0.321 3.679 19 O -0.443 6.443 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.343 0.657 28 H 0.030 0.970 29 H 0.018 0.982 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 6.537 -11.286 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 H 0.117 0.883 4 C -0.185 4.185 5 C -0.082 4.082 6 N -0.281 5.281 7 C -0.057 4.057 8 H 0.117 0.883 9 C -0.001 4.001 10 C -0.539 4.539 11 H 0.082 0.918 12 C -0.149 4.149 13 N -0.538 5.538 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.212 1.212 18 C 0.193 3.807 19 O -0.313 6.313 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.725 6.461 -10.604 13.286 hybrid contribution -0.042 -0.243 0.031 0.249 sum -4.767 6.218 -10.573 13.160 Atomic orbital electron populations 1.21635 0.93900 1.02289 1.01653 1.22050 0.97342 1.01128 0.96216 0.88318 1.22443 0.98748 1.00604 0.96671 1.22133 0.92156 0.99109 0.94763 1.60632 1.62332 1.05256 0.99910 1.22602 0.88988 1.00833 0.93250 0.88316 1.19065 0.97461 0.93291 0.90300 1.21183 0.91754 1.28130 1.12820 0.91759 1.25040 0.97664 0.96189 0.95994 1.69997 1.33973 1.32286 1.17589 0.86511 0.85827 0.77795 0.77688 1.19690 1.21323 1.21247 1.26426 0.93683 0.74970 0.85660 1.90339 1.60433 1.42392 1.38174 0.92120 0.92558 0.92537 0.91754 0.91102 0.90827 0.90525 0.83890 0.95185 0.96348 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.64 37.16 0.32 -1.44 16 2 C -0.15 -2.04 3.06 -91.22 -0.28 -2.32 16 3 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.15 -1.72 5.39 -26.53 -0.14 -1.86 16 5 C 0.05 0.64 6.43 -3.87 -0.02 0.61 16 6 N -0.65 -11.62 6.31 -107.57 -0.68 -12.30 16 7 C 0.05 1.08 2.66 -68.46 -0.18 0.90 16 8 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 9 C 0.04 0.95 4.06 -27.88 -0.11 0.83 16 10 C -0.50 -14.12 8.87 -34.44 -0.31 -14.43 16 11 H 0.06 1.78 7.74 -52.48 -0.41 1.37 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 13 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 14 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 C 0.32 6.00 6.57 -28.38 -0.19 5.81 16 19 O -0.44 -9.86 15.79 6.00 0.09 -9.77 16 20 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.34 6.15 8.71 -39.30 -0.34 5.80 16 28 H 0.03 0.87 7.87 -51.92 -0.41 0.46 16 29 H 0.02 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 251.29 15.07 3.79 3.79 Total: -1.00 -31.73 251.29 -6.60 -38.33 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.51 Total: 0.30 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.01 Total: -10.49 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.06 Total: -39.19 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.73 -6.60 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983681.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.764 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds