Wall clock time and date at job start Mon Mar 30 2020 02:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.72843 * 2 1 4 4 C 1.53382 * 109.73447 * 239.31759 * 2 1 3 5 5 C 1.53014 * 109.13361 * 187.88274 * 4 2 1 6 6 N 1.46794 * 109.89922 * 62.84940 * 5 4 2 7 7 C 1.47090 * 111.16442 * 294.61958 * 6 5 4 8 8 H 1.09000 * 109.62442 * 296.46805 * 7 6 5 9 9 C 1.53002 * 109.77773 * 175.99510 * 7 6 5 10 10 C 1.50696 * 109.47674 * 65.85720 * 9 7 6 11 11 H 1.08007 * 119.99722 * 359.97438 * 10 9 7 12 12 C 1.37879 * 120.00193 * 179.97438 * 10 9 7 13 13 N 1.31506 * 119.99813 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00014 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46748 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47294 * 119.99723 * 14 12 10 17 17 H 1.48496 * 109.47072 * 240.00303 * 14 12 10 18 18 C 1.51313 * 108.54130 * 56.18737 * 7 6 5 19 19 O 1.20758 * 121.00786 * 129.74551 * 18 7 6 20 20 H 1.09002 * 109.47153 * 299.34930 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.35121 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.35102 * 1 2 3 23 23 H 1.09001 * 109.52278 * 307.77563 * 4 2 1 24 24 H 1.08997 * 109.53166 * 67.98133 * 4 2 1 25 25 H 1.08997 * 109.39826 * 302.71448 * 5 4 2 26 26 H 1.09003 * 109.32728 * 182.94117 * 5 4 2 27 27 H 1.00892 * 111.00032 * 58.69855 * 6 5 4 28 28 H 1.09009 * 109.46889 * 185.85933 * 9 7 6 29 29 H 1.09005 * 109.47293 * 305.85208 * 9 7 6 30 30 H 0.96999 * 120.00261 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0260 0.0000 4 6 2.0479 -0.7367 -1.2416 5 6 3.5651 -0.9014 -1.1306 6 7 3.8935 -1.7338 0.0331 7 6 3.5146 -1.0659 1.2876 8 1 4.0963 -0.1517 1.4058 9 6 3.7781 -1.9992 2.4710 10 6 5.2603 -2.2367 2.6033 11 1 5.9460 -1.7690 1.9121 12 6 5.7413 -3.0509 3.6067 13 7 4.9065 -3.6199 4.4486 14 14 7.5786 -3.3459 3.7702 15 1 8.2965 -2.5973 2.7074 16 1 8.0384 -2.8781 5.1025 17 1 7.8614 -4.7969 3.6302 18 6 2.0413 -0.7266 1.2262 19 8 1.2959 -1.0258 2.1278 20 1 -0.3633 0.5037 0.8958 21 1 -0.3633 -1.0276 -0.0116 22 1 -0.3634 0.5239 -0.8841 23 1 1.5785 -1.7185 -1.3049 24 1 1.8084 -0.1591 -2.1344 25 1 4.0283 0.0787 -1.0171 26 1 3.9434 -1.3779 -2.0351 27 1 3.4602 -2.6421 -0.0383 28 1 3.4003 -1.5418 3.3856 29 1 3.2713 -2.9497 2.3041 30 1 5.2447 -4.1925 5.1547 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983681.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:58 Heat of formation + Delta-G solvation = -75.021849 kcal Electronic energy + Delta-G solvation = -12773.169162 eV Core-core repulsion = 10566.733481 eV Total energy + Delta-G solvation = -2206.435682 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.27049 -37.83884 -35.73110 -34.21569 -31.74103 -28.76191 -27.58904 -25.08796 -23.09260 -22.03360 -20.36817 -18.49825 -17.10346 -16.61100 -16.40558 -16.20204 -15.99052 -15.25387 -14.21670 -14.03738 -13.97889 -13.62777 -13.17384 -12.98173 -12.84925 -12.49817 -12.43587 -12.28389 -12.12078 -11.69945 -11.56855 -11.23467 -10.75202 -10.54146 -9.00849 -8.13640 -6.22952 0.95649 1.43181 1.43822 1.58089 2.45201 3.04537 3.17800 3.39916 3.84732 3.88589 3.97837 4.28290 4.46925 4.54842 4.65590 4.73547 4.86598 4.96002 5.00684 5.08699 5.20545 5.29297 5.43901 5.52742 5.82913 6.10393 6.31968 6.42777 6.63678 6.93150 7.44870 8.98992 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056922 B = 0.009511 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.780982 B = 2943.369485 C = 3318.236853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 H 0.126 0.874 4 C -0.135 4.135 5 C 0.047 3.953 6 N -0.664 5.664 7 C 0.059 3.941 8 H 0.105 0.895 9 C 0.044 3.956 10 C -0.509 4.509 11 H 0.071 0.929 12 C -0.011 4.011 13 N -0.942 5.942 14 Si 0.970 3.030 15 H -0.257 1.257 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.320 3.680 19 O -0.491 6.491 20 H 0.046 0.954 21 H 0.041 0.959 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.338 0.662 28 H -0.013 1.013 29 H -0.017 1.017 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 7.837 -13.908 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 H 0.144 0.856 4 C -0.174 4.174 5 C -0.082 4.082 6 N -0.295 5.295 7 C -0.052 4.052 8 H 0.123 0.877 9 C 0.006 3.994 10 C -0.547 4.547 11 H 0.090 0.910 12 C -0.207 4.207 13 N -0.584 5.584 14 Si 0.795 3.205 15 H -0.181 1.181 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.195 3.805 19 O -0.365 6.365 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.112 0.888 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.006 0.994 29 H 0.002 0.998 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.852 7.785 -13.265 15.856 hybrid contribution -0.330 -0.645 0.827 1.099 sum -4.182 7.140 -12.438 14.939 Atomic orbital electron populations 1.21643 0.93022 1.01828 1.02758 1.22077 0.98015 1.01743 0.93783 0.85616 1.22404 0.97272 1.00817 0.96952 1.22312 0.93483 0.99075 0.93293 1.60583 1.62869 1.05727 1.00317 1.22276 0.91034 0.99448 0.92418 0.87721 1.18809 0.96292 0.92727 0.91531 1.21532 0.92655 1.27774 1.12719 0.91049 1.26057 1.03065 0.95945 0.95630 1.70160 1.36544 1.33243 1.18446 0.85315 0.79339 0.77817 0.78017 1.18112 1.20878 1.20781 1.26853 0.92542 0.74189 0.86898 1.90330 1.61114 1.44626 1.40414 0.93504 0.93951 0.88822 0.92279 0.86962 0.89611 0.88108 0.84440 0.99448 0.99848 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.64 71.98 0.62 -2.51 16 2 C -0.14 -3.38 3.06 -11.18 -0.03 -3.42 16 3 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.14 -2.64 5.39 30.73 0.17 -2.47 16 5 C 0.05 1.07 6.43 86.33 0.56 1.62 16 6 N -0.66 -23.02 6.31 -494.23 -3.12 -26.14 16 7 C 0.06 2.41 2.66 44.33 0.12 2.52 16 8 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 9 C 0.04 2.42 4.06 29.85 0.12 2.54 16 10 C -0.51 -29.33 8.87 25.60 0.23 -29.10 16 11 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 12 C -0.01 -0.64 5.46 84.66 0.46 -0.18 16 13 N -0.94 -60.01 13.29 21.45 0.28 -59.73 16 14 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 C 0.32 12.01 6.57 29.53 0.19 12.21 16 19 O -0.49 -22.85 15.79 -1.44 -0.02 -22.88 16 20 H 0.05 1.21 8.03 -2.39 -0.02 1.19 16 21 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 25 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 26 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.34 12.11 8.71 -89.70 -0.78 11.33 16 28 H -0.01 -0.80 7.87 -2.38 -0.02 -0.82 16 29 H -0.02 -1.03 8.13 -2.38 -0.02 -1.05 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.33 251.29 1.93 -70.40 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.33 Total: 9.46 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 2.43 Total: -18.77 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.83 Total: -85.87 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.02 Total: -22.88 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.33 1.93 -70.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983681.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.622 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds