Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.76469 * 2 1 4 4 C 1.53379 * 109.73163 * 239.33139 * 2 1 3 5 5 C 1.53021 * 109.19209 * 292.84441 * 4 2 1 6 6 N 1.46803 * 109.89333 * 297.10987 * 5 4 2 7 7 C 1.47100 * 111.16528 * 65.37982 * 6 5 4 8 8 H 1.09003 * 109.62300 * 63.71768 * 7 6 5 9 9 C 1.52995 * 109.62471 * 184.10036 * 7 6 5 10 10 C 1.50703 * 109.46963 * 295.00172 * 9 7 6 11 11 H 1.08001 * 119.99924 * 359.97438 * 10 9 7 12 12 C 1.37883 * 119.99709 * 180.02562 * 10 9 7 13 13 N 1.31510 * 119.99543 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 119.99943 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47368 * 90.00597 * 14 12 10 16 16 H 1.48501 * 109.46827 * 210.00241 * 14 12 10 17 17 H 1.48496 * 109.47220 * 330.00204 * 14 12 10 18 18 C 1.51321 * 108.53860 * 303.81863 * 7 6 5 19 19 O 1.20764 * 120.99915 * 230.28901 * 18 7 6 20 20 H 1.09000 * 109.47259 * 180.66952 * 1 2 3 21 21 H 1.08995 * 109.47014 * 300.66390 * 1 2 3 22 22 H 1.08999 * 109.47344 * 60.66851 * 1 2 3 23 23 H 1.09002 * 109.52680 * 172.91061 * 4 2 1 24 24 H 1.08998 * 109.52553 * 52.77407 * 4 2 1 25 25 H 1.08993 * 109.40189 * 57.23820 * 5 4 2 26 26 H 1.08994 * 109.39997 * 176.98560 * 5 4 2 27 27 H 1.00897 * 110.99876 * 301.30759 * 6 5 4 28 28 H 1.08993 * 109.47324 * 54.99854 * 9 7 6 29 29 H 1.09000 * 109.46833 * 175.00162 * 9 7 6 30 30 H 0.97003 * 119.99877 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0258 0.0000 4 6 2.0479 -0.7364 -1.2418 5 6 1.6896 -2.2201 -1.1327 6 7 2.3624 -2.8122 0.0300 7 6 1.8626 -2.2313 1.2856 8 1 0.8064 -2.4725 1.4056 9 6 2.6561 -2.7970 2.4651 10 6 2.3967 -4.2769 2.5815 11 1 1.7319 -4.7651 1.8842 12 6 3.0072 -5.0075 3.5789 13 7 2.7811 -6.2991 3.6801 14 14 4.1563 -4.1629 4.7853 15 1 3.3789 -3.6821 5.9556 16 1 5.1910 -5.1260 5.2402 17 1 4.8125 -3.0094 4.1191 18 6 2.0415 -0.7299 1.2259 19 8 2.5763 -0.1309 2.1279 20 1 -0.3634 -1.0276 0.0120 21 1 -0.3633 0.5241 0.8839 22 1 -0.3634 0.5034 -0.8959 23 1 3.1305 -0.6267 -1.3054 24 1 1.5859 -0.3148 -2.1345 25 1 0.6107 -2.3246 -1.0187 26 1 2.0086 -2.7371 -2.0376 27 1 3.3638 -2.7115 -0.0416 28 1 3.7202 -2.6264 2.3023 29 1 2.3449 -2.3001 3.3840 30 1 3.2109 -6.8131 4.3815 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983688.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = -47.077859 kcal Electronic energy + Delta-G solvation = -12888.352580 eV Core-core repulsion = 10683.128641 eV Total energy + Delta-G solvation = -2205.223939 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.98549 -36.69045 -34.04535 -32.31491 -30.46722 -27.62256 -25.98546 -23.57340 -22.19762 -20.38309 -18.64407 -16.70104 -15.70920 -15.13484 -15.08684 -14.68880 -14.38208 -13.85371 -13.28724 -12.76186 -12.51043 -12.23023 -12.12604 -11.82452 -11.31040 -11.17724 -10.87959 -10.63166 -10.43163 -10.15587 -9.77912 -9.37609 -9.10725 -8.45117 -7.69505 -5.94356 -3.90450 2.26881 3.38182 3.45257 3.52253 4.28068 4.54168 4.62416 4.76837 4.88746 5.07871 5.35699 5.39890 5.43217 5.55840 5.71669 5.79276 5.86750 5.94011 6.00578 6.10355 6.26713 6.48815 7.11847 7.22840 7.51735 7.67241 7.86188 7.95806 8.65006 9.16405 9.68097 11.18839 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049998 B = 0.010757 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.892306 B = 2602.344254 C = 2894.852891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 H 0.084 0.916 4 C -0.148 4.148 5 C 0.048 3.952 6 N -0.647 5.647 7 C 0.064 3.936 8 H 0.106 0.894 9 C -0.002 4.002 10 C -0.500 4.500 11 H 0.082 0.918 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.872 3.128 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C 0.324 3.676 19 O -0.452 6.452 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.342 0.658 28 H 0.018 0.982 29 H 0.024 0.976 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 11.078 -9.691 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 H 0.102 0.898 4 C -0.188 4.188 5 C -0.082 4.082 6 N -0.277 5.277 7 C -0.046 4.046 8 H 0.124 0.876 9 C -0.039 4.039 10 C -0.538 4.538 11 H 0.100 0.900 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.700 3.300 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.191 1.191 18 C 0.196 3.804 19 O -0.323 6.323 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.161 0.839 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.085 10.684 -9.053 14.339 hybrid contribution 1.050 1.339 0.585 1.799 sum -2.034 12.022 -8.468 14.845 Atomic orbital electron populations 1.21732 0.92679 1.03083 1.02236 1.22080 0.98075 1.00409 0.95840 0.89791 1.22453 1.01192 0.98354 0.96791 1.22177 1.00544 0.90817 0.94709 1.60610 1.09910 1.57492 0.99722 1.22345 1.02742 0.86809 0.92728 0.87624 1.19552 0.94938 0.97695 0.91733 1.21003 1.28173 0.90393 1.14252 0.89951 1.24973 0.96421 0.94716 0.97380 1.69905 1.44415 1.06276 1.33766 0.86903 0.81429 0.79661 0.82055 1.20408 1.21485 1.19117 1.26508 0.73861 0.94403 0.85647 1.90337 1.32161 1.71420 1.38355 0.91298 0.92357 0.91704 0.91801 0.90850 0.90415 0.90344 0.83931 0.96415 0.95732 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.95 37.16 0.33 -1.23 16 2 C -0.14 -1.91 3.22 -91.15 -0.29 -2.20 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.15 -1.69 5.54 -26.52 -0.15 -1.84 16 5 C 0.05 0.61 6.29 -3.87 -0.02 0.59 16 6 N -0.65 -11.36 6.28 -107.55 -0.68 -12.03 16 7 C 0.06 1.25 2.44 -68.45 -0.17 1.08 16 8 H 0.11 2.05 7.88 -51.93 -0.41 1.64 16 9 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 10 C -0.50 -14.21 9.40 -34.44 -0.32 -14.54 16 11 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 14 Si 0.87 22.47 27.47 -169.99 -4.67 17.80 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 18 C 0.32 5.79 6.06 -28.30 -0.17 5.62 16 19 O -0.45 -9.65 16.81 6.00 0.10 -9.54 16 20 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.97 6.51 -51.93 -0.34 0.63 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.34 5.93 8.71 -39.29 -0.34 5.58 16 28 H 0.02 0.45 7.19 -51.93 -0.37 0.07 16 29 H 0.02 0.63 7.33 -51.93 -0.38 0.25 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 244.67 15.07 3.69 3.69 Total: -1.00 -32.13 244.67 -6.05 -38.18 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.29 Total: 0.09 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.98 Total: -10.80 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.10 Total: -39.41 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.10 Total: -9.54 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.13 -6.05 -38.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983688.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.901 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds