Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.76469 * 2 1 4 4 C 1.53379 * 109.73163 * 239.33139 * 2 1 3 5 5 C 1.53021 * 109.19209 * 292.84441 * 4 2 1 6 6 N 1.46803 * 109.89333 * 297.10987 * 5 4 2 7 7 C 1.47100 * 111.16528 * 65.37982 * 6 5 4 8 8 H 1.09003 * 109.62300 * 63.71768 * 7 6 5 9 9 C 1.52995 * 109.62471 * 184.10036 * 7 6 5 10 10 C 1.50703 * 109.46963 * 295.00172 * 9 7 6 11 11 H 1.08001 * 119.99924 * 359.97438 * 10 9 7 12 12 C 1.37883 * 119.99709 * 180.02562 * 10 9 7 13 13 N 1.31510 * 119.99543 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 119.99943 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47368 * 90.00597 * 14 12 10 16 16 H 1.48501 * 109.46827 * 210.00241 * 14 12 10 17 17 H 1.48496 * 109.47220 * 330.00204 * 14 12 10 18 18 C 1.51321 * 108.53860 * 303.81863 * 7 6 5 19 19 O 1.20764 * 120.99915 * 230.28901 * 18 7 6 20 20 H 1.09000 * 109.47259 * 180.66952 * 1 2 3 21 21 H 1.08995 * 109.47014 * 300.66390 * 1 2 3 22 22 H 1.08999 * 109.47344 * 60.66851 * 1 2 3 23 23 H 1.09002 * 109.52680 * 172.91061 * 4 2 1 24 24 H 1.08998 * 109.52553 * 52.77407 * 4 2 1 25 25 H 1.08993 * 109.40189 * 57.23820 * 5 4 2 26 26 H 1.08994 * 109.39997 * 176.98560 * 5 4 2 27 27 H 1.00897 * 110.99876 * 301.30759 * 6 5 4 28 28 H 1.08993 * 109.47324 * 54.99854 * 9 7 6 29 29 H 1.09000 * 109.46833 * 175.00162 * 9 7 6 30 30 H 0.97003 * 119.99877 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0258 0.0000 4 6 2.0479 -0.7364 -1.2418 5 6 1.6896 -2.2201 -1.1327 6 7 2.3624 -2.8122 0.0300 7 6 1.8626 -2.2313 1.2856 8 1 0.8064 -2.4725 1.4056 9 6 2.6561 -2.7970 2.4651 10 6 2.3967 -4.2769 2.5815 11 1 1.7319 -4.7651 1.8842 12 6 3.0072 -5.0075 3.5789 13 7 2.7811 -6.2991 3.6801 14 14 4.1563 -4.1629 4.7853 15 1 3.3789 -3.6821 5.9556 16 1 5.1910 -5.1260 5.2402 17 1 4.8125 -3.0094 4.1191 18 6 2.0415 -0.7299 1.2259 19 8 2.5763 -0.1309 2.1279 20 1 -0.3634 -1.0276 0.0120 21 1 -0.3633 0.5241 0.8839 22 1 -0.3634 0.5034 -0.8959 23 1 3.1305 -0.6267 -1.3054 24 1 1.5859 -0.3148 -2.1345 25 1 0.6107 -2.3246 -1.0187 26 1 2.0086 -2.7371 -2.0376 27 1 3.3638 -2.7115 -0.0416 28 1 3.7202 -2.6264 2.3023 29 1 2.3449 -2.3001 3.3840 30 1 3.2109 -6.8131 4.3815 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983688.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = -70.704286 kcal Electronic energy + Delta-G solvation = -12889.377099 eV Core-core repulsion = 10683.128641 eV Total energy + Delta-G solvation = -2206.248458 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.36538 -38.04149 -35.70455 -34.14699 -32.04961 -29.12184 -27.28466 -25.08986 -23.59054 -21.98643 -20.03874 -18.76781 -17.01412 -16.70731 -16.41419 -16.19230 -15.81689 -15.50045 -14.80913 -14.45867 -13.81609 -13.61652 -13.35651 -13.12505 -12.97355 -12.71483 -12.28879 -12.10664 -11.94493 -11.74272 -11.58776 -11.34011 -10.83986 -10.71507 -9.02230 -8.24121 -6.24092 0.86054 1.32271 1.34078 1.46155 2.36384 2.97987 3.08005 3.36800 3.78883 3.86657 3.93515 4.16709 4.38577 4.51682 4.62170 4.74026 4.78806 4.92793 4.99989 5.04924 5.13288 5.14338 5.29295 5.41849 5.61940 6.10105 6.35605 6.39447 6.56973 6.84375 7.37662 8.92138 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049998 B = 0.010757 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.892306 B = 2602.344254 C = 2894.852891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 H 0.094 0.906 4 C -0.139 4.139 5 C 0.046 3.954 6 N -0.667 5.667 7 C 0.066 3.934 8 H 0.104 0.896 9 C 0.002 3.998 10 C -0.496 4.496 11 H 0.051 0.949 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.935 3.065 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.328 3.672 19 O -0.493 6.493 20 H 0.065 0.935 21 H 0.052 0.948 22 H 0.098 0.902 23 H 0.063 0.937 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.340 0.660 28 H 0.010 0.990 29 H 0.012 0.988 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 12.869 -11.160 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.083 4.083 6 N -0.298 5.298 7 C -0.045 4.045 8 H 0.122 0.878 9 C -0.036 4.036 10 C -0.535 4.535 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.588 5.588 14 Si 0.760 3.240 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.187 1.187 18 C 0.203 3.797 19 O -0.367 6.367 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.116 0.884 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.159 0.841 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.249 12.483 -10.550 16.664 hybrid contribution 1.035 0.726 0.967 1.591 sum -2.214 13.209 -9.583 16.469 Atomic orbital electron populations 1.21781 0.90798 1.03318 1.03691 1.22072 0.99408 1.00272 0.93623 0.88770 1.22408 1.01498 0.96722 0.97140 1.22328 1.00551 0.92145 0.93279 1.60565 1.10160 1.58755 1.00343 1.22090 1.01640 0.88637 0.92104 0.87841 1.19402 0.95216 0.95227 0.93746 1.21190 1.26869 0.92341 1.13075 0.93058 1.25789 0.98283 0.95298 0.99452 1.70032 1.46037 1.07794 1.34959 0.85890 0.79558 0.78727 0.79799 1.19714 1.20585 1.18671 1.26801 0.72627 0.93504 0.86803 1.90326 1.34306 1.71762 1.40316 0.91641 0.92914 0.88375 0.91827 0.87051 0.89727 0.88371 0.84130 0.97209 0.96965 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.95 71.98 0.64 -1.96 16 2 C -0.13 -3.13 3.22 -11.13 -0.04 -3.17 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.14 -2.60 5.54 30.73 0.17 -2.43 16 5 C 0.05 1.05 6.29 86.33 0.54 1.59 16 6 N -0.67 -22.88 6.28 -494.18 -3.10 -25.98 16 7 C 0.07 2.56 2.44 44.33 0.11 2.67 16 8 H 0.10 4.04 7.88 -2.39 -0.02 4.02 16 9 C 0.00 0.09 3.11 29.85 0.09 0.18 16 10 C -0.50 -28.90 9.40 25.60 0.24 -28.66 16 11 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 12 C 0.01 0.50 5.47 84.66 0.46 0.96 16 13 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 14 Si 0.94 46.93 27.47 68.60 1.88 48.82 16 15 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.26 -12.87 6.54 99.48 0.65 -12.22 16 18 C 0.33 11.37 6.06 29.58 0.18 11.55 16 19 O -0.49 -20.89 16.81 -1.46 -0.02 -20.91 16 20 H 0.06 1.28 6.17 -2.39 -0.01 1.27 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.85 6.51 -2.39 -0.02 1.83 16 26 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.34 11.60 8.71 -89.70 -0.78 10.82 16 28 H 0.01 0.49 7.19 -2.39 -0.02 0.47 16 29 H 0.01 0.63 7.33 -2.39 -0.02 0.61 16 30 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -70.63 244.67 1.75 -68.88 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.29 Total: 8.33 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 2.41 Total: -19.27 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.80 Total: -85.85 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.02 Total: -20.91 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.82 kcal Total: -70.63 1.75 -68.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983688.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.820 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds