Wall clock time and date at job start Mon Mar 30 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.52997 * 109.46879 * 119.99836 * 2 1 3 5 5 H 1.09000 * 110.83570 * 56.27145 * 4 2 1 6 6 C 1.54848 * 110.94375 * 179.97438 * 4 2 1 7 7 O 1.44280 * 101.19432 * 141.42564 * 6 4 2 8 8 C 1.34597 * 107.66795 * 335.36532 * 7 6 4 9 9 C 1.50701 * 122.93601 * 197.19077 * 8 7 6 10 10 C 1.50695 * 109.46848 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99572 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 N 1.28632 * 114.12409 * 17.45692 * 8 7 6 19 19 H 1.09003 * 109.46982 * 300.00383 * 1 2 3 20 20 H 1.09004 * 109.47359 * 59.99791 * 1 2 3 21 21 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.46857 * 239.99695 * 2 1 3 23 23 H 1.08993 * 109.46889 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46951 * 299.99824 * 3 2 1 25 25 H 1.09003 * 109.47480 * 59.99922 * 3 2 1 26 26 H 1.09001 * 111.07269 * 23.45226 * 6 4 2 27 27 H 1.09003 * 111.11548 * 259.42379 * 6 4 2 28 28 H 1.09002 * 109.47060 * 60.02353 * 9 8 7 29 29 H 1.08998 * 109.47176 * 300.03000 * 9 8 7 30 30 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6359 -1.7320 1.3055 6 6 3.5879 -0.7417 1.2835 7 8 3.8398 -0.5339 2.6888 8 6 2.7722 0.1024 3.2055 9 6 2.8079 0.8198 4.5303 10 6 1.4551 1.4205 4.8128 11 1 0.6498 1.2949 4.1043 12 6 1.2454 2.1303 5.9761 13 7 2.2261 2.2837 6.8388 14 14 -0.4318 2.8744 6.3268 15 1 -1.4514 1.7958 6.3759 16 1 -0.7810 3.8369 5.2512 17 1 -0.3966 3.5814 7.6322 18 7 1.7173 0.0399 2.4721 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 4.0039 0.0700 0.6865 27 1 3.9752 -1.7059 0.9541 28 1 3.5567 1.6111 4.4949 29 1 3.0637 0.1128 5.3195 30 1 3.0969 1.8970 6.6569 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019872.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:56 Heat of formation + Delta-G solvation = -30.785454 kcal Electronic energy + Delta-G solvation = -12755.924539 eV Core-core repulsion = 10551.407092 eV Total energy + Delta-G solvation = -2204.517448 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.69135 -35.71216 -33.85674 -31.95610 -29.82026 -27.29485 -26.71707 -23.44542 -23.06552 -19.86825 -19.33138 -16.64882 -16.49362 -15.61172 -14.74337 -14.35835 -13.67115 -13.58320 -13.12732 -12.62310 -12.16352 -11.98523 -11.89312 -11.64474 -11.09126 -10.89346 -10.73730 -10.61260 -10.40767 -10.34418 -10.02370 -9.31643 -8.61673 -8.49375 -8.24247 -6.34909 -4.04178 2.98954 3.49491 3.51874 3.70482 3.94960 4.59412 4.65881 4.95725 5.07228 5.17887 5.31936 5.41560 5.50369 5.55545 5.86295 5.88581 5.99936 6.10904 6.17787 6.23918 6.49344 6.55705 6.68536 6.91007 7.09801 7.19703 7.99594 8.59787 8.66500 8.92561 9.64949 11.04823 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038375 B = 0.010805 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.469106 B = 2590.721532 C = 3094.109250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C -0.150 4.150 4 C 0.017 3.983 5 H 0.085 0.915 6 C 0.015 3.985 7 O -0.359 6.359 8 C 0.322 3.678 9 C 0.073 3.927 10 C -0.587 4.587 11 H 0.076 0.924 12 C 0.014 3.986 13 N -0.916 5.916 14 Si 1.075 2.925 15 H -0.287 1.287 16 H -0.287 1.287 17 H -0.284 1.284 18 N -0.517 5.517 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -4.227 -12.266 12.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.208 4.208 4 C -0.093 4.093 5 H 0.102 0.898 6 C -0.062 4.062 7 O -0.263 6.263 8 C 0.097 3.903 9 C 0.035 3.965 10 C -0.625 4.625 11 H 0.094 0.906 12 C -0.189 4.189 13 N -0.552 5.552 14 Si 0.903 3.097 15 H -0.214 1.214 16 H -0.214 1.214 17 H -0.210 1.210 18 N -0.252 5.252 19 H 0.090 0.910 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.387 -3.190 -11.155 11.685 hybrid contribution 1.672 -1.424 -1.566 2.698 sum 0.286 -4.614 -12.722 13.536 Atomic orbital electron populations 1.21720 0.94405 1.01333 1.02212 1.20907 0.96860 0.96264 0.95143 1.21902 1.00129 0.96134 1.02588 1.23705 0.92388 0.98810 0.94434 0.89755 1.24619 0.97456 1.02364 0.81758 1.86974 1.43920 1.73087 1.22346 1.26584 0.80764 0.86203 0.96724 1.18255 1.00552 0.93884 0.83797 1.21977 0.96016 1.36288 1.08234 0.90552 1.25887 1.04917 0.95494 0.92588 1.70813 1.03294 1.43995 1.37141 0.83444 0.73978 0.76257 0.75995 1.21382 1.21385 1.20962 1.74966 1.24997 1.21110 1.04122 0.90959 0.93366 0.93354 0.91639 0.93419 0.93043 0.90881 0.90288 0.88623 0.94160 0.94200 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.11 37.16 0.34 -1.64 16 2 C -0.07 -1.05 2.87 -90.62 -0.26 -1.31 16 3 C -0.15 -2.26 8.74 37.16 0.32 -1.93 16 4 C 0.02 0.29 3.48 -66.35 -0.23 0.06 16 5 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 6 C 0.02 0.24 7.55 38.13 0.29 0.53 16 7 O -0.36 -7.40 11.17 -15.57 -0.17 -7.57 16 8 C 0.32 7.45 7.68 -13.62 -0.10 7.34 16 9 C 0.07 1.89 4.91 -29.04 -0.14 1.74 16 10 C -0.59 -16.70 8.95 -34.44 -0.31 -17.01 16 11 H 0.08 2.21 6.76 -52.49 -0.36 1.86 16 12 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 13 N -0.92 -27.65 13.65 55.43 0.76 -26.89 16 14 Si 1.08 25.62 29.90 -169.99 -5.08 20.53 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 N -0.52 -11.40 8.59 -50.61 -0.43 -11.84 16 19 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.68 6.18 -51.93 -0.32 0.36 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.34 7.51 -51.93 -0.39 0.95 16 26 H 0.08 1.16 5.92 -51.93 -0.31 0.85 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.04 1.06 8.01 -51.93 -0.42 0.65 16 29 H 0.04 1.06 8.01 -51.93 -0.42 0.65 16 30 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 LS Contribution 249.77 15.07 3.76 3.76 Total: -1.00 -30.50 249.77 -5.61 -36.11 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.24 Total: -2.19 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.19 Total: -11.92 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.32 Total: -38.73 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.17 Total: -7.57 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.50 -5.61 -36.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019872.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.325 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds