Wall clock time and date at job start Mon Mar 30 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.52997 * 109.46879 * 119.99836 * 2 1 3 5 5 H 1.09000 * 110.83570 * 56.27145 * 4 2 1 6 6 C 1.54848 * 110.94375 * 179.97438 * 4 2 1 7 7 O 1.44280 * 101.19432 * 141.42564 * 6 4 2 8 8 C 1.34597 * 107.66795 * 335.36532 * 7 6 4 9 9 C 1.50701 * 122.93601 * 197.19077 * 8 7 6 10 10 C 1.50695 * 109.46848 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99572 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 N 1.28632 * 114.12409 * 17.45692 * 8 7 6 19 19 H 1.09003 * 109.46982 * 300.00383 * 1 2 3 20 20 H 1.09004 * 109.47359 * 59.99791 * 1 2 3 21 21 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.46857 * 239.99695 * 2 1 3 23 23 H 1.08993 * 109.46889 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46951 * 299.99824 * 3 2 1 25 25 H 1.09003 * 109.47480 * 59.99922 * 3 2 1 26 26 H 1.09001 * 111.07269 * 23.45226 * 6 4 2 27 27 H 1.09003 * 111.11548 * 259.42379 * 6 4 2 28 28 H 1.09002 * 109.47060 * 60.02353 * 9 8 7 29 29 H 1.08998 * 109.47176 * 300.03000 * 9 8 7 30 30 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6359 -1.7320 1.3055 6 6 3.5879 -0.7417 1.2835 7 8 3.8398 -0.5339 2.6888 8 6 2.7722 0.1024 3.2055 9 6 2.8079 0.8198 4.5303 10 6 1.4551 1.4205 4.8128 11 1 0.6498 1.2949 4.1043 12 6 1.2454 2.1303 5.9761 13 7 2.2261 2.2837 6.8388 14 14 -0.4318 2.8744 6.3268 15 1 -1.4514 1.7958 6.3759 16 1 -0.7810 3.8369 5.2512 17 1 -0.3966 3.5814 7.6322 18 7 1.7173 0.0399 2.4721 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 4.0039 0.0700 0.6865 27 1 3.9752 -1.7059 0.9541 28 1 3.5567 1.6111 4.4949 29 1 3.0637 0.1128 5.3195 30 1 3.0969 1.8970 6.6569 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019872.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:56 Heat of formation + Delta-G solvation = -52.472594 kcal Electronic energy + Delta-G solvation = -12756.864964 eV Core-core repulsion = 10551.407092 eV Total energy + Delta-G solvation = -2205.457873 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.22422 -37.00292 -35.93727 -33.68776 -31.47349 -28.88295 -28.03849 -25.48230 -24.47064 -21.51759 -20.72655 -18.72609 -17.97112 -17.18782 -16.29527 -15.63019 -15.53985 -14.98590 -14.61253 -14.42806 -13.99109 -13.73374 -13.28333 -12.84851 -12.64302 -12.59407 -12.37056 -12.00675 -11.90095 -11.82433 -11.63382 -11.01123 -10.64810 -10.57590 -9.93334 -8.65606 -6.35231 1.26392 1.56158 1.64495 1.84725 2.39346 2.63269 3.18192 3.24490 3.66495 3.85286 3.90861 4.11833 4.29233 4.38661 4.65950 4.70116 4.78126 4.83525 4.89647 4.97711 4.98418 5.02782 5.16689 5.33461 5.39529 5.58344 5.85572 6.30003 6.57499 7.02562 7.41855 8.75422 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038375 B = 0.010805 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.469106 B = 2590.721532 C = 3094.109250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.148 4.148 4 C 0.010 3.990 5 H 0.095 0.905 6 C 0.014 3.986 7 O -0.372 6.372 8 C 0.307 3.693 9 C 0.074 3.926 10 C -0.596 4.596 11 H 0.068 0.932 12 C -0.034 4.034 13 N -0.938 5.938 14 Si 1.120 2.880 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.282 1.282 18 N -0.533 5.533 19 H 0.035 0.965 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.106 0.894 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.134 0.866 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -4.833 -14.410 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.205 4.205 4 C -0.099 4.099 5 H 0.113 0.887 6 C -0.062 4.062 7 O -0.276 6.276 8 C 0.081 3.919 9 C 0.036 3.964 10 C -0.634 4.634 11 H 0.087 0.913 12 C -0.231 4.231 13 N -0.576 5.576 14 Si 0.942 3.058 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.207 1.207 18 N -0.269 5.269 19 H 0.054 0.946 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.124 0.876 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.152 0.848 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.009 -3.814 -13.328 14.008 hybrid contribution 1.895 -1.294 -1.009 2.507 sum -0.114 -5.108 -14.337 15.220 Atomic orbital electron populations 1.21697 0.94398 1.01849 1.01540 1.20996 0.96862 0.95770 0.95135 1.21875 1.00444 0.96552 1.01667 1.23950 0.93521 0.98979 0.93467 0.88715 1.24969 0.96740 1.05052 0.79429 1.86929 1.43169 1.72636 1.24914 1.25879 0.82137 0.87628 0.96217 1.17974 0.99172 0.93578 0.85679 1.22204 0.96803 1.36256 1.08093 0.91331 1.27334 1.07664 0.95625 0.92472 1.70922 1.03457 1.45207 1.37981 0.82875 0.70314 0.76308 0.76317 1.19799 1.19711 1.20704 1.74874 1.25193 1.20873 1.05946 0.94554 0.91105 0.92263 0.87621 0.92891 0.90643 0.95059 0.88877 0.84782 0.95419 0.95625 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.11 71.98 0.66 -2.91 16 2 C -0.07 -1.77 2.87 -10.79 -0.03 -1.80 16 3 C -0.15 -4.13 8.74 71.98 0.63 -3.50 16 4 C 0.01 0.33 3.48 45.41 0.16 0.49 16 5 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 6 C 0.01 0.40 7.55 72.61 0.55 0.95 16 7 O -0.37 -15.08 11.17 -78.62 -0.88 -15.96 16 8 C 0.31 14.38 7.68 88.58 0.68 15.06 16 9 C 0.07 3.97 4.91 29.10 0.14 4.11 16 10 C -0.60 -34.68 8.95 25.60 0.23 -34.45 16 11 H 0.07 4.04 6.76 -2.91 -0.02 4.02 16 12 C -0.03 -1.97 5.46 84.66 0.46 -1.51 16 13 N -0.94 -57.80 13.65 21.45 0.29 -57.51 16 14 Si 1.12 51.53 29.90 68.60 2.05 53.58 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 N -0.53 -23.45 8.59 -429.27 -3.69 -27.14 16 19 H 0.04 1.19 7.91 -2.39 -0.02 1.17 16 20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.05 1.39 6.18 -2.39 -0.01 1.38 16 24 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.03 1.12 7.51 -2.39 -0.02 1.10 16 26 H 0.09 2.44 5.92 -2.39 -0.01 2.43 16 27 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.03 1.54 8.01 -2.39 -0.02 1.52 16 29 H 0.03 1.43 8.01 -2.39 -0.02 1.41 16 30 H 0.26 15.85 7.22 -92.70 -0.67 15.18 16 Total: -1.00 -66.88 249.77 2.46 -64.41 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.21 Total: 6.18 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 3.47 Total: -23.57 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -3.40 Total: -84.65 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.88 Total: -15.96 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -66.88 2.46 -64.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019872.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.940 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds